RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 EPSTI1Q96J88 318 aa10.97□□□□□ -0.65
CLK3-208ENST00000562626 ZNF396Q96N95 335 aaPredicted RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 IPO9Q96P70 1041 aaKnown RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 PLIN2Q99541 437 aa10.97□□□□□ -0.65
CLK3-208ENST00000562626 POLR3CQ9BUI4 534 aaPredicted RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 HTATIP2Q9BUP3 242 aa10.97□□□□□ -0.65
CLK3-208ENST00000562626 NOC4LQ9BVI4 516 aaKnown RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 NIFKQ9BYG3 293 aaKnown RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 PPP1R12CQ9BZL4 782 aa10.97□□□□□ -0.65
CLK3-208ENST00000562626 BMP2KQ9NSY1 1161 aaPredicted RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 COLQQ9Y215 455 aaPredicted RBP10.97□□□□□ -0.65
CLK3-208ENST00000562626 COL1A2P08123 1366 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 MROH7Q68CQ1 1323 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 NRCAMQ92823 1304 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 DDX11L8A8MPP1 907 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 DCDC2CA8MYV0 355 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 E9PMD0 336 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 SPTLC2O15270 562 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 HBP1O60381 514 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 LYPLA2O95372 231 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 YEATS4O95619 227 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 PDIA4P13667 645 aaKnown RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 KLRC1P26715 233 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 RPA1P27694 616 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 YWHABP31946 246 aaKnown RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 SLC26A2P50443 739 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 NUCB2P80303 420 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 MBTPS1Q14703 1052 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 GPNMBQ14956 572 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 KARSQ15046 597 aaKnown RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 MTHFD1LQ6UB35 978 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 LRRC71Q8N4P6 559 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 LEO1Q8WVC0 666 aaPredicted RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 ZSWIM4Q9H7M6 989 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 TUFT1Q9NNX1 390 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 XPNPEP1Q9NQW7 623 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 DDX19AQ9NUU7 478 aaKnown RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 TMEM39AQ9NV64 488 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 TUBE1Q9UJT0 475 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 RCOR1Q9UKL0 485 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 PCDHA7Q9UN72 937 aa10.96□□□□□ -0.65
CLK3-208ENST00000562626 SRPRBQ9Y5M8 271 aaKnown RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 MORC2Q9Y6X9 1032 aaPredicted RBP10.96□□□□□ -0.65
CLK3-208ENST00000562626 FNDC1Q4ZHG4 1894 aaPredicted RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 NLRC5Q86WI3 1866 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 H0YGN5 161 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 BMP15O95972 392 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 NCLP19338 710 aaKnown RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 CLCN3P51790 818 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 EPHB4P54760 987 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 TMEM62Q0P6H9 643 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 ZRSR1Q15695 479 aaKnown RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 TCTN1Q2MV58 587 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 TMEM119Q4V9L6 283 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 XKR3Q5GH77 459 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 ZNF484Q5JVG2 852 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 HYIQ5T013 277 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 SHC4Q6S5L8 630 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 CABP7Q86V35 215 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 KRI1Q8N9T8 703 aaKnown RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 NEK9Q8TD19 979 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 DNAJB3Q8WWF6 145 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 SYMPKQ92797 1274 aaKnown RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 SCLYQ96I15 445 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 ZNF668Q96K58 619 aaPredicted RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 FAM167AQ96KS9 214 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 FAM49AQ9H0Q0 323 aaPredicted RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 POLD4Q9HCU8 107 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 CYP26B1Q9NR63 512 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 CIZ1Q9ULV3 898 aaPredicted RBP10.95□□□□□ -0.66
CLK3-208ENST00000562626 CEP131Q9UPN4 1083 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 KIAA1024Q9UPX6 916 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 ANK1P16157 1881 aa10.95□□□□□ -0.66
CLK3-208ENST00000562626 PDCD11Q14690 1871 aaKnown RBP10.94□□□□□ -0.66
CLK3-208ENST00000562626 IGKV6-21A0A0C4DH24 114 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 TLR3O15455 904 aaKnown RBP10.94□□□□□ -0.66
CLK3-208ENST00000562626 PPP6R2O75170 966 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 CTSHP09668 335 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 CKBP12277 381 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 LONP1P36776 959 aaKnown RBP10.94□□□□□ -0.66
CLK3-208ENST00000562626 RARRES1P49788 294 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 CCL23P55773 120 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 PTK7Q13308 1070 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 NAALADL2Q58DX5 795 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 XKR9Q5GH70 373 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 ZNF618Q5T7W0 954 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 KIAA0319LQ8IZA0 1049 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 ERMNQ8TAM6 284 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 BADQ92934 168 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 TNPO1Q92973 898 aaKnown RBP10.94□□□□□ -0.66
CLK3-208ENST00000562626 PPP1R16BQ96T49 567 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 SEZ6LQ9BYH1 1024 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 HIPK3Q9H422 1215 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 CDHR5Q9HBB8 845 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 BLOC1S4Q9NUP1 217 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 CHMP5Q9NZZ3 219 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 PCDHA2Q9Y5H9 948 aa10.94□□□□□ -0.66
CLK3-208ENST00000562626 TTC3P53804 2025 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 RRN3P2A6NIE6 340 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 MAFO75444 373 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms