RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 GJB7Q6PEY0 223 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 ZNF713Q8N859 430 aaPredicted RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 USP38Q8NB14 1042 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 CCDC97Q96F63 343 aaPredicted RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 CEP63Q96MT8 703 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 PLAAQ9Y263 795 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 CETN3O15182 167 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 ERVK-9P63128 1117 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 MTA1Q13330 715 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 TRAPPC3LQ5T215 181 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 RC3H1Q5TC82 1133 aaKnown RBP12.35□□□□□ -0.43
CUX1-218ENST00000560541 MFSD4BQ5TF39 518 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 PRR5LQ6MZQ0 368 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 SYN2Q92777 582 aaPredicted RBP12.35□□□□□ -0.43
CUX1-218ENST00000560541 ZCWPW1Q9H0M4 648 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 NT5C3AQ9H0P0 336 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 DDX47Q9H0S4 455 aaKnown RBP12.35□□□□□ -0.43
CUX1-218ENST00000560541 IKZF4Q9H2S9 585 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 A1CFQ9NQ94 594 aaKnown RBP12.35□□□□□ -0.43
CUX1-218ENST00000560541 ZNF232Q9UNY5 417 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 SNHG28P0DPA3 235 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 NR1D1P20393 614 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 LSP1P33241 339 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 NOVP48745 357 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 SKOR1P84550 965 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 CYP4A11Q02928 519 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 CDC37Q16543 378 aaPredicted RBP12.35□□□□□ -0.43
CUX1-218ENST00000560541 FAM196AQ6ZSG2 479 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 RNF14Q9UBS8 474 aa12.35□□□□□ -0.43
CUX1-218ENST00000560541 ZBTB5O15062 677 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 GNA14O95837 355 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 IL1R1P14778 569 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 UCHL3P15374 230 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 PRR16Q569H4 304 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 RNF187Q5TA31 235 aaPredicted RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 AIPL1Q9NZN9 384 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 SERPINB13Q9UIV8 391 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 AJAP1Q9UKB5 411 aaPredicted RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 KDM3AQ9Y4C1 1321 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 RSPH10B2B2RC85 870 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 RSPH10BP0C881 870 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 MYBP10242 640 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 MYBL1P10243 752 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 TNNC1P63316 161 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 GABPAQ06546 454 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 SLC30A10Q6XR72 485 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 IRF2BP2Q7Z5L9 587 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 SFR1Q86XK3 245 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 RBM46Q8TBY0 533 aaKnown RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 C8orf37Q96NL8 207 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 ARMCX3Q9UH62 379 aaPredicted RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 DDX20Q9UHI6 824 aaKnown RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 NRAPQ86VF7 1730 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 GAKO14976 1311 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 CLIC2O15247 247 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 KIF4AO95239 1232 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 ITGA4P13612 1032 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 CASP4P49662 377 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 KCNA1Q09470 495 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 SEPT2Q15019 361 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 ALKBH5Q6P6C2 394 aaKnown RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 CATSPER3Q86XQ3 398 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 TBC1D16Q8TBP0 767 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 TACO1Q9BSH4 297 aaKnown RBP12.34□□□□□ -0.43
CUX1-218ENST00000560541 PCDHA1Q9Y5I3 950 aa12.34□□□□□ -0.43
CUX1-218ENST00000560541 MYH4Q9Y623 1939 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 SFI1A8K8P3 1242 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 KIAA0754O94854 1291 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 SLC12A3P55017 1021 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 EXOC3L4Q17RC7 722 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 QRICH1Q2TAL8 776 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 REEP2Q9BRK0 252 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 YIPF3Q9GZM5 350 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 NEUROG2Q9H2A3 272 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 DHX36Q9H2U1 1008 aaKnown RBP12.33□□□□□ -0.44
CUX1-218ENST00000560541 KDM4CQ9H3R0 1056 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 PPANQ9NQ55 473 aaKnown RBP12.33□□□□□ -0.44
CUX1-218ENST00000560541 BACH1O14867 736 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 AKAP3O75969 853 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 ATP2B4P23634 1241 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 SHMT1P34896 483 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 CACNB3P54284 484 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 NAA35Q5VZE5 725 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 SLF2Q8IX21 1173 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 ATP6V1G3Q96LB4 118 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 P2RX7Q99572 595 aaKnown RBP12.33□□□□□ -0.44
CUX1-218ENST00000560541 ANO3Q9BYT9 981 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 TAF1DQ9H5J8 278 aaPredicted RBP12.33□□□□□ -0.44
CUX1-218ENST00000560541 AMACRQ9UHK6 382 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 NAGPAQ9UK23 515 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 COL24A1Q17RW2 1714 aa12.33□□□□□ -0.44
CUX1-218ENST00000560541 IGKV6D-41A0A0C4DH26 115 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 KDM4FA0A1W2PPD8 638 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 XRCC5P13010 732 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 PON1P27169 355 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 HOXD13P35453 343 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 FLT3P36888 993 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 USH1GQ495M9 461 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 KDM7AQ6ZMT4 941 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 METTL13Q8N6R0 699 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms