RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ANO5Q75V66 913 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 OTUD6AQ7L8S5 288 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 CEP57L1Q8IYX8 460 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 LRRC15Q8TF66 581 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 RAD54LQ92698 747 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 KAT2BQ92831 832 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 SH2D3AQ9BRG2 576 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 PYM1Q9BRP8 204 aaKnown RBP10.73□□□□□ -0.69
CUX1-216ENST00000558469 RNPEPQ9H4A4 650 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 NRBP2Q9NSY0 501 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 BLOC1S4Q9NUP1 217 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 DACT1Q9NYF0 836 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 STK17AQ9UEE5 414 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 SEPT9Q9UHD8 586 aaPredicted RBP10.73□□□□□ -0.69
CUX1-216ENST00000558469 SERTAD1Q9UHV2 236 aa10.73□□□□□ -0.69
CUX1-216ENST00000558469 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 KBTBD13C9JR72 458 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 ACTN4O43707 911 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 KINO60870 393 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 SGPL1O95470 568 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 EYA4O95677 639 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 MBD3O95983 291 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 F2P00734 622 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 SSBP05455 408 aaKnown RBP eCLIP10.72□□□□□ -0.69
CUX1-216ENST00000558469 GJB1P08034 283 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 SLFN14P0C7P3 912 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 PLA2G4BP0C869 781 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 XRCC6P12956 609 aaKnown RBP eCLIP10.72□□□□□ -0.69
CUX1-216ENST00000558469 PSEN2P49810 448 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 ACLYP53396 1101 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 MCM6Q14566 821 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 KIAA0753Q2KHM9 967 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 XKR9Q5GH70 373 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 PLA2G4FQ68DD2 849 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 KRBA2Q6ZNG9 492 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 KCTD17Q8N5Z5 321 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 CNNM3Q8NE01 707 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 U2AF1L4Q8WU68 220 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 PPP1R13LQ8WUF5 828 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 BBXQ8WY36 941 aaPredicted RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 LARP4BQ92615 738 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 VTI1AQ96AJ9 217 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 FAM167AQ96KS9 214 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 CCDC43Q96MW1 224 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 TSEN34Q9BSV6 310 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 MTG1Q9BT17 334 aaPredicted RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 KATNAL1Q9BW62 490 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 BHMT2Q9H2M3 363 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 CUEDC2Q9H467 287 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 ANKEF1Q9NU02 776 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 USP25Q9UHP3 1055 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 DBR1Q9UK59 544 aaKnown RBP10.72□□□□□ -0.69
CUX1-216ENST00000558469 OGDHLQ9ULD0 1010 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 BRCA2P51587 3418 aa10.72□□□□□ -0.69
CUX1-216ENST00000558469 DNAH12Q6ZR08 3092 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 ARHGEF35A5YM69 484 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 HBP1O60381 514 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 AFMP43652 599 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 NPEPPSP55786 919 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 MTERF2Q49AM1 385 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 SV2BQ7L1I2 683 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 GRAMD1CQ8IYS0 662 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 SYT2Q8N9I0 419 aaPredicted RBP10.71□□□□□ -0.69
CUX1-216ENST00000558469 ATP8B4Q8TF62 1192 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 STAMQ92783 540 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 PAGE5Q96GU1 130 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 CEP170P1Q96L14 293 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 TMEM106CQ9BVX2 250 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 NIFKQ9BYG3 293 aaKnown RBP10.71□□□□□ -0.69
CUX1-216ENST00000558469 CYP26B1Q9NR63 512 aa10.71□□□□□ -0.69
CUX1-216ENST00000558469 BMP2KQ9NSY1 1161 aaPredicted RBP10.71□□□□□ -0.69
CUX1-216ENST00000558469 KIAA0100Q14667 2235 aaKnown RBP10.7□□□□□ -0.7
CUX1-216ENST00000558469 A0A1W2PQ45 241 aaPredicted RBP10.7□□□□□ -0.7
CUX1-216ENST00000558469 A0A1W2PQY0 241 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 MOXD2PA6NHM9 499 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 HAS3O00219 553 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 DNM1LO00429 736 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 CABYRO75952 493 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 SMIM10L2AP0DMW4 78 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 SMIM10L2BP0DMW5 78 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 INSRRP14616 1297 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 GJA8P48165 433 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 RARRES1P49788 294 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 SLC12A3P55017 1021 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 IGBP1P78318 339 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 CAMK4Q16566 473 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 SKOR2Q2VWA4 1001 aaPredicted RBP10.7□□□□□ -0.7
CUX1-216ENST00000558469 NBPF20Q3BBV1 942 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 KANK3Q6NY19 840 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 GPBP1Q86WP2 473 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 C7orf31Q8N865 590 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 TRAPPC12Q8WVT3 735 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 TIGD1Q96MW7 591 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 CRISPLD2Q9H0B8 497 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 MAGEF1Q9HAY2 307 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 PHF24Q9UPV7 400 aa10.7□□□□□ -0.7
CUX1-216ENST00000558469 COL1A2P08123 1366 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 NPHP3-ACAD11A0A0J9YXS1 232 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 MYMKA6NI61 221 aa10.69□□□□□ -0.7
CUX1-216ENST00000558469 ZBTB42B2RXF5 422 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms