RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 CHRNA1P02708 482 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 NLRP5P59047 1200 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 KRT76Q01546 638 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 TAP1Q03518 808 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 PLCB4Q15147 1175 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 ZNF484Q5JVG2 852 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 DAGLBQ8NCG7 672 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 WNT2BQ93097 391 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 TOP1MTQ969P6 601 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 RIT2Q99578 217 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 UPF3BQ9BZI7 483 aaKnown RBP11.47□□□□□ -0.57
USP3-207ENST00000558218 NCOA5Q9HCD5 579 aaKnown RBP11.47□□□□□ -0.57
USP3-207ENST00000558218 TCEAL9Q9UHQ7 104 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 PCDHA4Q9UN74 947 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 PCDHA10Q9Y5I2 948 aa11.47□□□□□ -0.57
USP3-207ENST00000558218 COL1A2P08123 1366 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 CYP3A7-CYP3A51PA0A087WV96 503 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 SMIM35A0A1B0GVV1 85 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 CCNE2O96020 404 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 XBP1P17861 261 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 CYP3A7P24462 503 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 MARK3P27448 753 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 DEFB103AP81534 67 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 HTRA4P83105 476 aaPredicted RBP11.46□□□□□ -0.57
USP3-207ENST00000558218 ADGRE1Q14246 886 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 MOXD1Q6UVY6 613 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 ATP8B4Q8TF62 1192 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 ATXN2LQ8WWM7 1075 aaKnown RBP11.46□□□□□ -0.57
USP3-207ENST00000558218 SYMPKQ92797 1274 aaKnown RBP11.46□□□□□ -0.57
USP3-207ENST00000558218 IFIH1Q9BYX4 1025 aaKnown RBP11.46□□□□□ -0.57
USP3-207ENST00000558218 SLKQ9H2G2 1235 aaPredicted RBP11.46□□□□□ -0.57
USP3-207ENST00000558218 ZNF302Q9NR11 478 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 VPS54Q9P1Q0 977 aa11.46□□□□□ -0.57
USP3-207ENST00000558218 MAFBQ9Y5Q3 323 aaPredicted RBP11.46□□□□□ -0.57
USP3-207ENST00000558218 COL6A3P12111 3177 aa11.46□□□□□ -0.58
USP3-207ENST00000558218 KDM3AQ9Y4C1 1321 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 M0QZ92 97 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 M0R2N6 131 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 BACH1O14867 736 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 PFKFB2O60825 505 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 PSAPP07602 524 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 IGFBP4P22692 258 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 SFNP31947 248 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 PRSS12P56730 875 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 ERVK-21P61565 698 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 MRPS6P82932 125 aaKnown RBP11.45□□□□□ -0.58
USP3-207ENST00000558218 MGAT3Q09327 533 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 TCTN1Q2MV58 587 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 Q4G0T1 1027 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 PRR16Q569H4 304 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 SWSAP1Q6NVH7 229 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 PDXDC2PQ6P474 469 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP3-207ENST00000558218 BLIDQ8IZY5 108 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 RDM1Q8NG50 284 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 DNAJB3Q8WWF6 145 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 WASF1Q92558 559 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 SAMD11Q96NU1 681 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 TGS1Q96RS0 853 aaKnown RBP11.45□□□□□ -0.58
USP3-207ENST00000558218 FTHL17Q9BXU8 183 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 CEP131Q9UPN4 1083 aa11.45□□□□□ -0.58
USP3-207ENST00000558218 STK36Q9NRP7 1315 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 MICAL3Q7RTP6 2002 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 MAGEB2O15479 319 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 CTSHP09668 335 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 KLRC1P26715 233 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 SCRN1Q12765 414 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 FBXO47Q5MNV8 452 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 ODR4Q5SWX8 454 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 MTHFD1LQ6UB35 978 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 RUFY4Q6ZNE9 571 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 TSHZ1Q6ZSZ6 1077 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 KRT25Q7Z3Z0 450 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 SLC5A5Q92911 643 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 LENG9Q96B70 501 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 FAM167AQ96KS9 214 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 CELF4Q9BZC1 486 aaKnown RBP11.44□□□□□ -0.58
USP3-207ENST00000558218 NPDC1Q9NQX5 325 aaPredicted RBP11.44□□□□□ -0.58
USP3-207ENST00000558218 TPCN1Q9ULQ1 816 aa11.44□□□□□ -0.58
USP3-207ENST00000558218 MYH9P35579 1960 aaKnown RBP11.44□□□□□ -0.58
USP3-207ENST00000558218 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.43□□□□□ -0.58
USP3-207ENST00000558218 LINC01553A4QN01 128 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 WDR64B1ANS9 1081 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 ENPP3O14638 875 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 ADAMTS3O15072 1205 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 MSH4O15457 936 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 EDIL3O43854 480 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 JAK3P52333 1124 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 IGBP1P78318 339 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 LPIN1Q14693 890 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 PADI6Q6TGC4 694 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 CCDC60Q8IWA6 550 aaPredicted RBP11.43□□□□□ -0.58
USP3-207ENST00000558218 MYOCDQ8IZQ8 938 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 RASGRP4Q8TDF6 673 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 TBCKQ8TEA7 893 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 ARNTL2Q8WYA1 636 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 MBOAT7Q96N66 472 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 NAP1L4Q99733 375 aaKnown RBP11.43□□□□□ -0.58
USP3-207ENST00000558218 NRBP2Q9NSY0 501 aa11.43□□□□□ -0.58
USP3-207ENST00000558218 TRPV2Q9Y5S1 764 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms