RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 WFS1O76024 890 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 RPN1P04843 607 aaKnown RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 LINGO3P0C6S8 592 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 TSPY3P0CV98 308 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 TSPY8P0CW00 308 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 XBP1P17861 261 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 KIF5BP33176 963 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 CTNNA1P35221 906 aaKnown RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 EIF3BP55884 814 aaKnown RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 THEMIS2Q5TEJ8 643 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 PDXDC2PQ6P474 469 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 MTHFD1LQ6UB35 978 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.517e-6■□□□□ 10.8
USP3-206ENST00000558157 SDCCAG8Q86SQ7 713 aaPredicted RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 PNMA8AQ86V59 439 aaPredicted RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 GALNT15Q8N3T1 639 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 YIPF3Q9GZM5 350 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 DHX36Q9H2U1 1008 aaKnown RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 RGL1Q9NZL6 768 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 CNOT7Q9UIV1 285 aaKnown RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 ATRNL1Q5VV63 1379 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 RASSF10A6NK89 507 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 FAM196BA6NMK8 535 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 DIAPH2O60879 1101 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 NPTXRO95502 500 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 VIMP08670 466 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 NQO1P15559 274 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 CASP1P29466 404 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 CNGA1P29973 690 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 SHMT1P34896 483 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 PRCPP42785 496 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 NT5C2P49902 561 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 MRPS35P82673 323 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 PDIA5Q14554 519 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 TBC1D10BQ4KMP7 808 aaPredicted RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 IFIT1BQ5T764 474 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 C9orf131Q5VYM1 1079 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 SAMD7Q7Z3H4 446 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 KLHL23Q8NBE8 558 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 NUP133Q8WUM0 1156 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 XPO6Q96QU8 1125 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 DNAJC18Q9H819 358 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 CABP5Q9NP86 173 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 IL17RBQ9NRM6 502 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 GREB1LQ9C091 1923 aaPredicted RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 E7ENQ6 273 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 PSMA7O14818 248 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 ATP4AP20648 1035 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 TMOD1P28289 359 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 KIF11P52732 1056 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 LBRQ14739 615 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 GPR162Q16538 588 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 TBC1D25Q3MII6 688 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 KLHDC7AQ5VTJ3 777 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 TRPM8Q7Z2W7 1104 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 ZNF654Q8IZM8 581 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 GPC2Q8N158 579 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 CRACR2BQ8N4Y2 399 aaPredicted RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 BORCS6Q96GS4 357 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 ZNF317Q96PQ6 595 aaPredicted RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 TUBGCP2Q9BSJ2 902 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 CCDC134Q9H6E4 229 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 MLXIPQ9HAP2 919 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 LUC7LQ9NQ29 371 aaKnown RBP11.86□□□□□ -0.51
USP3-206ENST00000558157 SAMD15Q9P1V8 674 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 KCNJ14Q9UNX9 436 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 L3MBTL1Q9Y468 752 aa11.86□□□□□ -0.51
USP3-206ENST00000558157 PLIN4Q96Q06 1357 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 BHMG1C9JSJ3 638 aaPredicted RBP11.85□□□□□ -0.51
USP3-206ENST00000558157 CAND2O75155 1236 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 ATP2C2O75185 946 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 ATP2A2P16615 1042 aaKnown RBP11.85□□□□□ -0.51
USP3-206ENST00000558157 CXCR5P32302 372 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 PPP1R2P41236 205 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 MRPS25P82663 173 aaKnown RBP11.85□□□□□ -0.51
USP3-206ENST00000558157 NR5A1Q13285 461 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 PPP2R5BQ15173 497 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 SGSM1Q2NKQ1 1148 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 TMTC2Q8N394 836 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 DTNBP1Q96EV8 351 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 IFT74Q96LB3 600 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 NSRP1Q9H0G5 558 aaKnown RBP11.85□□□□□ -0.51
USP3-206ENST00000558157 TMEM59LQ9UK28 342 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 ASTN2O75129 1339 aaPredicted RBP11.85□□□□□ -0.51
USP3-206ENST00000558157 LRRD1A4D1F6 860 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 PHF20L1A8MW92 1017 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 PDLIM1O00151 329 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 SOCS7O14512 581 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 AKR1B1P15121 316 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 ANKRD20A2Q5SQ80 823 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 ANKRD20A1Q5TYW2 823 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 ANKRD20A3Q5VUR7 823 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 NEDD1Q8NHV4 660 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 FAM151AQ8WW52 585 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 TLCD1Q96CP7 247 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 DHTKD1Q96HY7 919 aaPredicted RBP11.85□□□□□ -0.51
USP3-206ENST00000558157 CSRNP1Q96S65 589 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 PANK4Q9NVE7 773 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 PI4KBQ9UBF8 816 aa11.85□□□□□ -0.51
USP3-206ENST00000558157 CTNNAL1Q9UBT7 734 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms