RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 METTL14Q9HCE5 456 aaKnown RBP13.93□□□□□ -0.18
SHMT2-229ENST00000557348 ANKEF1Q9NU02 776 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 ABHD10Q9NUJ1 306 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 ZNHIT6Q9NWK9 470 aaKnown RBP13.93□□□□□ -0.18
SHMT2-229ENST00000557348 SAMM50Q9Y512 469 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 RIPK3Q9Y572 518 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 RLFQ13129 1914 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 TESPA1A2RU30 521 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-229ENST00000557348 SLC16A3O15427 465 aaKnown RBP13.92□□□□□ -0.18
SHMT2-229ENST00000557348 CCDC175P0C221 793 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 CLCN6P51797 869 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 ITGB3BPQ13352 177 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-229ENST00000557348 TTLL12Q14166 644 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-229ENST00000557348 PLS1Q14651 629 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 PIGOQ8TEQ8 1089 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 DNAJC7Q99615 494 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 A1CFQ9NQ94 594 aaKnown RBP13.92□□□□□ -0.18
SHMT2-229ENST00000557348 LARSQ9P2J5 1176 aaKnown RBP13.92□□□□□ -0.18
SHMT2-229ENST00000557348 AGTPBP1Q9UPW5 1226 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 PCDHB13Q9Y5F0 798 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 LOC285556D6RIA3 1793 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 WDR90Q96KV7 1748 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 SCN4AP35499 1836 aa13.92□□□□□ -0.18
SHMT2-229ENST00000557348 LOC102724159A0A0B4J2E5 919 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 NPHP3-ACAD11A0A0J9YXS1 232 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 IVLP07476 585 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ABCD1P33897 745 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 KRT9P35527 623 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ZBED6P86452 979 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 PWP2Q15269 919 aaKnown RBP13.91□□□□□ -0.18
SHMT2-229ENST00000557348 LRRC41Q15345 812 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 STXBP2Q15833 593 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 MIIPQ5JXC2 388 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 OTUD6AQ7L8S5 288 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 FRMD5Q7Z6J6 570 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 MYCT1Q8N699 235 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 GOLGA6L1Q8N7Z2 621 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 MNS1Q8NEH6 495 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ATP6V0A1Q93050 837 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 WNK4Q96J92 1243 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 DRC1Q96MC2 740 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 NUCKS1Q9H1E3 243 aaKnown RBP13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ZNF446Q9NWS9 450 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 FZD1Q9UP38 647 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 A0A0G2JMZ2 1700 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 GCNT3O95395 438 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 OSBPP22059 807 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ICAM3P32942 547 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 FXR1P51114 621 aaKnown RBP eCLIP13.91□□□□□ -0.18
SHMT2-229ENST00000557348 SNRPFP62306 86 aaKnown RBP13.91□□□□□ -0.18
SHMT2-229ENST00000557348 RAD51AP2Q09MP3 1159 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ADAM9Q13443 819 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 GADL1Q6ZQY3 521 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 HS2ST1Q7LGA3 356 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 FAM178BQ8IXR5 827 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 TAF1DQ9H5J8 278 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-229ENST00000557348 ELP3Q9H9T3 547 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 TRMT1Q9NXH9 659 aaKnown RBP13.91□□□□□ -0.18
SHMT2-229ENST00000557348 TBC1D7Q9P0N9 293 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 KCNG1Q9UIX4 513 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 PPP2R2CQ9Y2T4 447 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 PCDHA10Q9Y5I2 948 aa13.91□□□□□ -0.18
SHMT2-229ENST00000557348 SMCHD1A6NHR9 2005 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 DDX39AO00148 427 aaKnown RBP13.9□□□□□ -0.18
SHMT2-229ENST00000557348 EIF3JO75822 258 aaKnown RBP13.9□□□□□ -0.18
SHMT2-229ENST00000557348 PSAPP07602 524 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 SCP2P22307 547 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 HNRNPH2P55795 449 aaKnown RBP13.9□□□□□ -0.18
SHMT2-229ENST00000557348 FKBP1BP68106 108 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 CDK17Q00537 523 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 CACNB1Q02641 598 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-229ENST00000557348 MYBPC2Q14324 1141 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 ARHGAP29Q52LW3 1261 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 PADI6Q6TGC4 694 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 NELFCDQ8IXH7 590 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 ANKRD35Q8N283 1001 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 BANK1Q8NDB2 785 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 CPLX3Q8WVH0 158 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 OTUD5Q96G74 571 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 PCMTD1Q96MG8 357 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-229ENST00000557348 MKNK1Q9BUB5 465 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 MOV10L1Q9BXT6 1211 aaKnown RBP13.9□□□□□ -0.18
SHMT2-229ENST00000557348 SPATC1LQ9H0A9 340 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 PNMA3Q9UL41 463 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 OTOFQ9HC10 1997 aa13.9□□□□□ -0.18
SHMT2-229ENST00000557348 SPATA31C2B4DYI2 1134 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 RPS6KA5O75582 802 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 EPB41P11171 864 aaKnown RBP13.89□□□□□ -0.19
SHMT2-229ENST00000557348 NR2F2P24468 414 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 YWHABP31946 246 aaKnown RBP13.89□□□□□ -0.19
SHMT2-229ENST00000557348 PLA2G4AP47712 749 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 RARRES1P49788 294 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 BRD3Q15059 726 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 ODR4Q5SWX8 454 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 TREML2Q5T2D2 321 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 TRIM59Q8IWR1 403 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 HNRNPLLQ8WVV9 542 aaKnown RBP13.89□□□□□ -0.19
SHMT2-229ENST00000557348 RABGGTAQ92696 567 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 TTYH3Q9C0H2 523 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 RASSF4Q9H2L5 321 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms