RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 POTEGQ6S5H5 508 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 CATSPER3Q86XQ3 398 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 C4orf19Q8IY42 314 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 SNX29Q8TEQ0 813 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 DNAJB3Q8WWF6 145 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 NIFKQ9BYG3 293 aaKnown RBP19.58■□□□□ 0.72
SHMT2-225ENST00000556798 TFIP11Q9UBB9 837 aaKnown RBP19.58■□□□□ 0.72
SHMT2-225ENST00000556798 CSF2RAP15509 400 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 CCT6AP40227 531 aaKnown RBP19.57■□□□□ 0.72
SHMT2-225ENST00000556798 NPEPPSP55786 919 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 RBL2Q08999 1139 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 PDIA5Q14554 519 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 TARBP2Q15633 366 aaKnown RBP19.57■□□□□ 0.72
SHMT2-225ENST00000556798 ZNF618Q5T7W0 954 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 PRPF38BQ5VTL8 546 aaKnown RBP19.57■□□□□ 0.72
SHMT2-225ENST00000556798 HAUS3Q68CZ6 603 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 TAF2Q6P1X5 1199 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 LRRC8DQ7L1W4 858 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 ZNF579Q8NAF0 562 aaKnown RBP19.57■□□□□ 0.72
SHMT2-225ENST00000556798 RETREG2Q8NC44 543 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 ZNF396Q96N95 335 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-225ENST00000556798 POLR3CQ9BUI4 534 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-225ENST00000556798 TUFT1Q9NNX1 390 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 PCDHA2Q9Y5H9 948 aa19.57■□□□□ 0.72
SHMT2-225ENST00000556798 IQCF3P0C7M6 154 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 SELPP16109 830 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 RPA1P27694 616 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 NASPP49321 788 aaPredicted RBP19.56■□□□□ 0.72
SHMT2-225ENST00000556798 FPGSQ05932 587 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 STK38Q15208 465 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 ECM1Q16610 540 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 TRAF7Q6Q0C0 670 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 CHRDL2Q6WN34 429 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 METTL13Q8N6R0 699 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 PIGOQ8TEQ8 1089 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 CHAMP1Q96JM3 812 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 CEP89Q96ST8 783 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 CYP26B1Q9NR63 512 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 TSHZ2Q9NRE2 1034 aa19.56■□□□□ 0.72
SHMT2-225ENST00000556798 BMP2KQ9NSY1 1161 aaPredicted RBP19.56■□□□□ 0.72
SHMT2-225ENST00000556798 LYPLA2O95372 231 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 DDIT3P35638 169 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 CLCN3P51790 818 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 EPHB4P54760 987 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 DNM1Q05193 864 aaKnown RBP19.55■□□□□ 0.72
SHMT2-225ENST00000556798 TBC1D8BQ0IIM8 1120 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 TMEM62Q0P6H9 643 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 ZRSR1Q15695 479 aaKnown RBP19.55■□□□□ 0.72
SHMT2-225ENST00000556798 KRT79Q5XKE5 535 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 LRRC71Q8N4P6 559 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 TMEM199Q8N511 208 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 CEP170P1Q96L14 293 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 GDF15Q99988 308 aa19.55■□□□□ 0.72
SHMT2-225ENST00000556798 MMTAG2Q9BU76 263 aaKnown RBP19.55■□□□□ 0.72
SHMT2-225ENST00000556798 FBXO2Q9UK22 296 aaPredicted RBP19.55■□□□□ 0.72
SHMT2-225ENST00000556798 SMIM35A0A1B0GVV1 85 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 ACRP10323 421 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 SLC39A14Q15043 492 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 XKR9Q5GH70 373 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 EFCAB12Q6NXP0 572 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 DEFB128Q7Z7B8 93 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 CLIC6Q96NY7 704 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 SUGCTQ9HAC7 445 aa19.54■□□□□ 0.72
SHMT2-225ENST00000556798 RSPH10B2B2RC85 870 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 MAGEB2O15479 319 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 RSPH10BP0C881 870 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 DRP2Q13474 957 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 MBTPS1Q14703 1052 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 SPECC1Q5M775 1068 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 OTUD6AQ7L8S5 288 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 RSPH3Q86UC2 560 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 KIAA0319LQ8IZA0 1049 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 LINC00301Q8NCQ3 95 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 CCDC43Q96MW1 224 aaKnown RBP19.53■□□□□ 0.72
SHMT2-225ENST00000556798 PPP1R16BQ96T49 567 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 UBE2OQ9C0C9 1292 aaKnown RBP19.53■□□□□ 0.72
SHMT2-225ENST00000556798 CSRNP2Q9H175 543 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 DDX19AQ9NUU7 478 aaKnown RBP19.53■□□□□ 0.72
SHMT2-225ENST00000556798 KIAA1024Q9UPX6 916 aa19.53■□□□□ 0.72
SHMT2-225ENST00000556798 CAND2O75155 1236 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 CHRNA1P02708 482 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 RARRES1P49788 294 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 POLGP54098 1239 aaPredicted RBP19.52■□□□□ 0.72
SHMT2-225ENST00000556798 MRPS6P82932 125 aaKnown RBP19.52■□□□□ 0.72
SHMT2-225ENST00000556798 PPIGQ13427 754 aaKnown RBP eCLIP19.52■□□□□ 0.727e-8■□□□□ 10.4
SHMT2-225ENST00000556798 GPNMBQ14956 572 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 RPAINQ86UA6 219 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 CABP7Q86V35 215 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 LINC01465Q8N7H1 131 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 VWCEQ96DN2 955 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 AK8Q96MA6 479 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 NACC1Q96RE7 527 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 PLIN2Q99541 437 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 OSBPL7Q9BZF2 842 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 ANKEF1Q9NU02 776 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 RBM19Q9Y4C8 960 aaKnown RBP19.52■□□□□ 0.72
SHMT2-225ENST00000556798 SRPRBQ9Y5M8 271 aaKnown RBP19.52■□□□□ 0.72
SHMT2-225ENST00000556798 STK24Q9Y6E0 443 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 CDY2AQ9Y6F7 541 aa19.52■□□□□ 0.72
SHMT2-225ENST00000556798 MICAL3Q7RTP6 2002 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms