RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PPP2R2DQ66LE6 453 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 MAP7D2Q96T17 732 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 NKX2-4Q9H2Z4 354 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 ZBTB42B2RXF5 422 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 ZNF862O60290 1169 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 GHRP10912 638 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 RABGGTBP53611 331 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 PSMC5P62195 406 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 CALCRLQ16602 461 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 GJA10Q969M2 543 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 TMX3Q96JJ7 454 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 CDX2Q99626 313 aaPredicted RBP23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 CELF4Q9BZC1 486 aaKnown RBP23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 VAV3Q9UKW4 847 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 PPME1Q9Y570 386 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 LOXHD1Q8IVV2 1947 aa23.2■■□□□ 1.3
CCDC88C-210ENST00000555995 FAM205CA6NFA0 338 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 GJB5O95377 273 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 DEFB103AP81534 67 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 GUCY1B3Q02153 619 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 LPIN1Q14693 890 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 HAS1Q92839 578 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 GAS2L1Q99501 681 aaPredicted RBP23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 JPH2Q9BR39 696 aaPredicted RBP23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 FTHL17Q9BXU8 183 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 BACH2Q9BYV9 841 aa23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 NOL7Q9UMY1 257 aaKnown RBP23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 YBX2Q9Y2T7 364 aaKnown RBP23.19■■□□□ 1.3
CCDC88C-210ENST00000555995 P4HBP07237 508 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 QARSP47897 775 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 TRAPPC10P48553 1259 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 TBC1D8BQ0IIM8 1120 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 MKRN4PQ13434 485 aaPredicted RBP23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 EPHA7Q15375 998 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 UGCGQ16739 394 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 EXOC8Q8IYI6 725 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 MYOCDQ8IZQ8 938 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 METTL13Q8N6R0 699 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 NEK9Q8TD19 979 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 RAD9AQ99638 391 aa23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 SEPT9Q9UHD8 586 aaPredicted RBP23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.18■■□□□ 1.3
CCDC88C-210ENST00000555995 CA3P07451 260 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 FOSL2P15408 326 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 PAK2Q13177 524 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 TCTN1Q2MV58 587 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 TRMT1LQ7Z2T5 733 aaKnown RBP23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 NOSTRINQ8IVI9 506 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 KIAA0319LQ8IZA0 1049 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 ZBTB10Q96DT7 871 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 NIFKQ9BYG3 293 aaKnown RBP23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 PCDHA12Q9UN75 941 aa23.17■■□□□ 1.3
CCDC88C-210ENST00000555995 COL4A6Q14031 1691 aa23.16■■□□□ 1.3
CCDC88C-210ENST00000555995 CDC42EP1Q00587 391 aa23.16■■□□□ 1.3
CCDC88C-210ENST00000555995 NCAPH2Q6IBW4 605 aa23.16■■□□□ 1.3
CCDC88C-210ENST00000555995 RNF216Q9NWF9 866 aaPredicted RBP23.16■■□□□ 1.3
CCDC88C-210ENST00000555995 INSL6Q9Y581 213 aa23.16■■□□□ 1.3
CCDC88C-210ENST00000555995 GTF3C3Q9Y5Q9 886 aa23.16■■□□□ 1.3
CCDC88C-210ENST00000555995 DNM2P50570 870 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 TMEM62Q0P6H9 643 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 GRIN2CQ14957 1233 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 EFCAB12Q6NXP0 572 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 BANK1Q8NDB2 785 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 MYLIPQ8WY64 445 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 AKT3Q9Y243 479 aa23.15■■□□□ 1.3
CCDC88C-210ENST00000555995 EML1O00423 815 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 CRYBB1P53674 252 aaPredicted RBP23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 SPIRE1Q08AE8 756 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 TARBP2Q15633 366 aaKnown RBP23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 MTERF2Q49AM1 385 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 C4orf19Q8IY42 314 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 LINC01465Q8N7H1 131 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 TOP1MTQ969P6 601 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 LXNQ9BS40 222 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 ZSWIM4Q9H7M6 989 aa23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 TTC12Q9H892 705 aaPredicted RBP23.14■■□□□ 1.29
CCDC88C-210ENST00000555995 DDX11L8A8MPP1 907 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 GPR182O15218 404 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 RPS6KA5O75582 802 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 MYOGP15173 224 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 U2AF2P26368 475 aaKnown RBP eCLIP23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 CD52P31358 61 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 CLCN3P51790 818 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 OTUD6AQ7L8S5 288 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 SMC3Q9UQE7 1217 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 GINS2Q9Y248 185 aa23.13■■□□□ 1.29
CCDC88C-210ENST00000555995 ARID2Q68CP9 1835 aa23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 GAS2O43903 313 aaKnown RBP23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 CD2BP2O95400 341 aaKnown RBP23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 MCM7P33993 719 aa23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 HTRA4P83105 476 aaPredicted RBP23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 TTC38Q5R3I4 469 aa23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 SLC7A3Q8WY07 619 aa23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 MTMR9Q96QG7 549 aa23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 AGO3Q9H9G7 860 aaKnown RBP23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 PADI3Q9ULW8 664 aa23.12■■□□□ 1.29
CCDC88C-210ENST00000555995 MYO9BQ13459 2157 aa23.11■■□□□ 1.29
CCDC88C-210ENST00000555995 H3BQV1 296 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms