RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 LINC00301Q8NCQ3 95 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 TCP1P17987 556 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 ATP11AP98196 1134 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 LMNB2Q03252 620 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 PFKFB3Q16875 520 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 WHAMMP3Q1A5X7 153 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 SGO2Q562F6 1265 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 PPP6R3Q5H9R7 873 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 SH2D4BQ5SQS7 431 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 RSBN1LQ6PCB5 846 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 CYFIP1Q7L576 1253 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 PPP2R3CQ969Q6 453 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 RAB3IPQ96QF0 476 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 SRPRBQ9Y5M8 271 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 EIF3CLB5ME19 914 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 CCNE1P24864 410 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 GBP1P32455 592 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 MYRIPQ8NFW9 859 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 PAGE5Q96GU1 130 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 EIF3CQ99613 913 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 MYL1P05976 194 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 QARSP47897 775 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 GRM4Q14833 912 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 LARGE1O95461 756 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 NT5C2P49902 561 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 CYP27A1Q02318 531 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 C2orf40Q9H1Z8 148 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 SUDS3Q9H7L9 328 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 RNF40O75150 1001 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 P4HBP07237 508 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PSMA2P25787 234 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 NNMTP40261 264 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 CUL4AQ13619 759 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 DPCR1Q3MIW9 517 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 ACCSLQ4AC99 568 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 TMED8Q6PL24 325 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PNMA8AQ86V59 439 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 ZNF280CQ8ND82 737 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 CDC26Q8NHZ8 85 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 RPGRIP1Q96KN7 1286 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PIN4Q9Y237 131 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 POTEB3A0JP26 581 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 POTECB2RU33 542 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 IPO5O00410 1097 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 GPC4O75487 556 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 FDX1P10109 184 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 RBL2Q08999 1139 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 CC2D1AQ6P1N0 951 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 POTEBQ6S5H4 581 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 RBM46Q8TBY0 533 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 GJB4Q9NTQ9 266 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 SLC9A2Q9UBY0 812 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 ADORA2BP29275 332 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PMLP29590 882 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 SLC10A5Q5PT55 438 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PPP1R18Q6NYC8 613 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 MMTAG2Q9BU76 263 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PHLPP2Q6ZVD8 1323 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 KIF28PB7ZC32 967 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 MOCS2O96007 188 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PSMC5P62195 406 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 ARL6IP4Q66PJ3 421 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 PASD1Q8IV76 773 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 ARHGAP24Q8N264 748 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 LXNQ9BS40 222 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 OSBPL5Q9H0X9 879 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 FIS1Q9Y3D6 152 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 GCLMP48507 274 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 SREBF2Q12772 1141 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 VEPH1Q14D04 833 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 TRIP13Q15645 432 aaPredicted RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 POTEDQ86YR6 584 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 GPATCH11Q8N954 259 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 FAM71BQ8TC56 605 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 MYOZ2Q9NPC6 264 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 OLA1Q9NTK5 396 aaKnown RBP8.85□□□□□ -0.99
SYNE2-220ENST00000555612 RWDD2AQ9UIY3 292 aa8.85□□□□□ -0.99
SYNE2-220ENST00000555612 CROCC2H7BZ55 1655 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 ENC1O14682 589 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 TFRCP02786 760 aaKnown RBP8.84□□□□□ -0.99
SYNE2-220ENST00000555612 KRT3P12035 628 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 LRRC31Q6UY01 552 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 CABS1Q96KC9 395 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 ARHGAP42A6NI28 874 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 PPFIA4O75335 1185 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 CAMTA2O94983 1202 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 ZBED1O96006 694 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 CETPP11597 493 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 FAM20AQ96MK3 541 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 TEX13BQ9BXU2 312 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 BAG5Q9UL15 447 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 SPATA31A5Q5VU36 1347 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 SPATA31A7Q8IWB4 1347 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 TET3O43151 1660 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 TTC36A6NLP5 189 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 EFCAB8A8MWE9 144 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 ADCY1Q08828 1119 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 NAA25Q14CX7 972 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 SIRT2Q8IXJ6 389 aa8.84□□□□□ -0.99
SYNE2-220ENST00000555612 XXYLT1Q8NBI6 393 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms