RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 MRPL43Q8N983 215 aaKnown RBP15.93■□□□□ 0.14
PRPF39-204ENST00000553605 RUBCNQ92622 972 aa15.93■□□□□ 0.14
PRPF39-204ENST00000553605 SMARCAD1Q9H4L7 1026 aa15.93■□□□□ 0.14
PRPF39-204ENST00000553605 RGS18Q9NS28 235 aa15.93■□□□□ 0.14
PRPF39-204ENST00000553605 C1orf112Q9NSG2 853 aa15.93■□□□□ 0.14
PRPF39-204ENST00000553605 FBXL21Q9UKT6 434 aa15.93■□□□□ 0.14
PRPF39-204ENST00000553605 DENND3A2RUS2 1198 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 ZNF213O14771 459 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 EOMESO95936 686 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 PDE4AP27815 886 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 HNRNPUQ00839 825 aaKnown RBP eCLIP15.92■□□□□ 0.14
PRPF39-204ENST00000553605 KRT76Q01546 638 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 TDGQ13569 410 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 KIAA1841Q6NSI8 718 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 ZNF589Q86UQ0 364 aaPredicted RBP15.92■□□□□ 0.14
PRPF39-204ENST00000553605 NLRX1Q86UT6 975 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 DCLK2Q8N568 766 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 C12orf76Q8N812 135 aaPredicted RBP15.92■□□□□ 0.14
PRPF39-204ENST00000553605 ADAM2Q99965 735 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 PCDHA2Q9Y5H9 948 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 KDM3AQ9Y4C1 1321 aa15.92■□□□□ 0.14
PRPF39-204ENST00000553605 C2orf71A6NGG8 1288 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 B4E1Z4 1266 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 C9IYK1 514 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 STK25O00506 426 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 ATP9AO75110 1047 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 CLASP2O75122 1294 aaKnown RBP15.91■□□□□ 0.14
PRPF39-204ENST00000553605 FGFR1P11362 822 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 SMC1AQ14683 1233 aaKnown RBP15.91■□□□□ 0.14
PRPF39-204ENST00000553605 KANK3Q6NY19 840 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 KCNT2Q6UVM3 1135 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 NME8Q8N427 588 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 RIN2Q8WYP3 895 aaPredicted RBP15.91■□□□□ 0.14
PRPF39-204ENST00000553605 ACSF2Q96CM8 615 aaPredicted RBP15.91■□□□□ 0.14
PRPF39-204ENST00000553605 PIGSQ96S52 555 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 ATP6V0A4Q9HBG4 840 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 ZSWIM5Q9P217 1185 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 MAD2L2Q9UI95 211 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 DUSP12Q9UNI6 340 aa15.91■□□□□ 0.14
PRPF39-204ENST00000553605 LOXHD1Q8IVV2 1947 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 CACNA1GO43497 2377 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 PPM1AP35813 382 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 PCNX4Q63HM2 1172 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 XRRA1Q6P2D8 792 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 ZC3H14Q6PJT7 736 aaKnown RBP15.9■□□□□ 0.14
PRPF39-204ENST00000553605 TNPO1Q92973 898 aaKnown RBP15.9■□□□□ 0.14
PRPF39-204ENST00000553605 ZNF558Q96NG5 402 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 TMEM161AQ9NX61 479 aa15.9■□□□□ 0.14
PRPF39-204ENST00000553605 NOC2LQ9Y3T9 749 aaKnown RBP15.9■□□□□ 0.14
PRPF39-204ENST00000553605 CEP250Q9BV73 2442 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 SMIM35A0A1B0GVV1 85 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 PALM3A6NDB9 673 aaPredicted RBP15.89■□□□□ 0.13
PRPF39-204ENST00000553605 RPS6KA5O75582 802 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 KCNA2P16389 499 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 ST3GAL2Q16842 350 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 ODR4Q5SWX8 454 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 LRRC55Q6ZSA7 311 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 DZANK1Q9NVP4 752 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 SPG21Q9NZD8 308 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 GINS2Q9Y248 185 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 ACACBO00763 2458 aa15.89■□□□□ 0.13
PRPF39-204ENST00000553605 CA8P35219 290 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 PBX3P40426 434 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 FAM189BP81408 668 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 NMIQ13287 307 aaPredicted RBP15.88■□□□□ 0.13
PRPF39-204ENST00000553605 IFIT1BQ5T764 474 aaKnown RBP15.88■□□□□ 0.13
PRPF39-204ENST00000553605 OTOP3Q7RTS5 596 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 TRAPPC12Q8WVT3 735 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 GPRASP2Q96D09 838 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 CDHR1Q96JP9 859 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 UBAC1Q9BSL1 405 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 TMEM117Q9H0C3 514 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 RIOX1Q9H6W3 641 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 ELAC1Q9H777 363 aaKnown RBP15.88■□□□□ 0.13
PRPF39-204ENST00000553605 KCNK12Q9HB15 430 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 ST3GAL5Q9UNP4 418 aa15.88■□□□□ 0.13
PRPF39-204ENST00000553605 CFAP47Q6ZTR5 3102 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 PNMA6FA0A0J9YX94 578 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 GPR182O15218 404 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 CXCL14O95715 111 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 SP9P0CG40 484 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 SDHBP21912 280 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 BMS1Q14692 1282 aaKnown RBP15.87■□□□□ 0.13
PRPF39-204ENST00000553605 PLCB4Q15147 1175 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 SLC35G1Q2M3R5 365 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 C20orf194Q5TEA3 1177 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 SMARCC2Q8TAQ2 1214 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 CASD1Q96PB1 797 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 PCYT2Q99447 389 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 CDHR5Q9HBB8 845 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 WNT16Q9UBV4 365 aa15.87■□□□□ 0.13
PRPF39-204ENST00000553605 KRBA1A5PL33 1030 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 RFX1P22670 979 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 ATXN1P54253 815 aaKnown RBP15.86■□□□□ 0.13
PRPF39-204ENST00000553605 TBC1D8BQ0IIM8 1120 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 KIAA0319Q5VV43 1072 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 MTHFD1LQ6UB35 978 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 TMC5Q6UXY8 1006 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 TICAM2Q86XR7 235 aa15.86■□□□□ 0.13
PRPF39-204ENST00000553605 TMEM87AQ8NBN3 555 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms