RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZNF720Q7Z2F6 126 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 FAM178BQ8IXR5 827 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 DNERQ8NFT8 737 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 BCAS3Q9H6U6 928 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 SLC16A3O15427 465 aaKnown RBP29■■■□□ 2.23
CCDC88C-205ENST00000553403 HIP1RO75146 1068 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 MAPTP10636 758 aaKnown RBP29■■■□□ 2.23
CCDC88C-205ENST00000553403 NMT1P30419 496 aaKnown RBP29■■■□□ 2.23
CCDC88C-205ENST00000553403 CDK17Q00537 523 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 CHP1Q99653 195 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 MOV10L1Q9BXT6 1211 aaKnown RBP29■■■□□ 2.23
CCDC88C-205ENST00000553403 POLD4Q9HCU8 107 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 ANKEF1Q9NU02 776 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 ZBTB4Q9P1Z0 1013 aaPredicted RBP29■■■□□ 2.23
CCDC88C-205ENST00000553403 KCNH4Q9UQ05 1017 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 PCDHB13Q9Y5F0 798 aa29■■■□□ 2.23
CCDC88C-205ENST00000553403 IRF6O14896 467 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 NR3C1P04150 777 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 KCNA2P16389 499 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 OTUD5Q96G74 571 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 MMRN2Q9H8L6 949 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 METTL14Q9HCE5 456 aaKnown RBP28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 DNAI1Q9UI46 699 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 EPN1Q9Y6I3 576 aaPredicted RBP28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 PFASO15067 1338 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 CTIFO43310 598 aaKnown RBP28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 HNRNPH3P31942 346 aaKnown RBP28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 YWHABP31946 246 aaKnown RBP28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 PPIL2Q13356 520 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 GNPTABQ3T906 1256 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 ODR4Q5SWX8 454 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 SMAP1Q8IYB5 467 aaPredicted RBP28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 DAW1Q8N136 415 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 BTBD7Q9P203 1132 aa28.99■■■□□ 2.23
CCDC88C-205ENST00000553403 TGFB1I1O43294 461 aa28.98■■■□□ 2.23
CCDC88C-205ENST00000553403 RGS20O76081 388 aa28.98■■■□□ 2.23
CCDC88C-205ENST00000553403 CLMNQ96JQ2 1002 aa28.98■■■□□ 2.23
CCDC88C-205ENST00000553403 STRA6Q9BX79 667 aa28.98■■■□□ 2.23
CCDC88C-205ENST00000553403 PCDHA10Q9Y5I2 948 aa28.98■■■□□ 2.23
CCDC88C-205ENST00000553403 ZMYM2Q9UBW7 1377 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 SPATA31C2B4DYI2 1134 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 DKC1O60832 514 aaKnown RBP eCLIP28.97■■■□□ 2.235e-9■■■■■ 40.8
CCDC88C-205ENST00000553403 NDUFA10O95299 355 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 IRX3P78415 501 aaPredicted RBP28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 KCNMA1Q12791 1236 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 ALCAMQ13740 583 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 NEK11Q8NG66 645 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 L2HGDHQ9H9P8 463 aa28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 ARMCX3Q9UH62 379 aaPredicted RBP28.97■■■□□ 2.23
CCDC88C-205ENST00000553403 CEP350Q5VT06 3117 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 TTLL12Q14166 644 aaPredicted RBP28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 UGCGQ16739 394 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 CCDC170Q8IYT3 715 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 FAM207AQ9NSI2 230 aaPredicted RBP28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 LARSQ9P2J5 1176 aaKnown RBP28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 PPP1R37O75864 691 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 EPB41P11171 864 aaKnown RBP28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 ARMC9Q7Z3E5 817 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 ANKRD35Q8N283 1001 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 ACRBPQ8NEB7 543 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 GOLGA5Q8TBA6 731 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 SMCR8Q8TEV9 937 aaPredicted RBP28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 CCDC43Q96MW1 224 aaKnown RBP28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 SPATC1LQ9H0A9 340 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 PLAGL2Q9UPG8 496 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 AGTPBP1Q9UPW5 1226 aa28.96■■■□□ 2.23
CCDC88C-205ENST00000553403 LCTP09848 1927 aa28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 ICAM3P32942 547 aa28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 CYLC1P35663 651 aaPredicted RBP28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 GNG11P61952 73 aa28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 KCNA1Q09470 495 aa28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 STXBP2Q15833 593 aa28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 ZC2HC1CQ53FD0 456 aaPredicted RBP28.95■■■□□ 2.22
CCDC88C-205ENST00000553403 EPHB6O15197 1021 aa28.94■■■□□ 2.22
CCDC88C-205ENST00000553403 ERCC3P19447 782 aa28.94■■■□□ 2.22
CCDC88C-205ENST00000553403 KCNH2Q12809 1159 aa28.94■■■□□ 2.22
CCDC88C-205ENST00000553403 HS2ST1Q7LGA3 356 aa28.94■■■□□ 2.22
CCDC88C-205ENST00000553403 DRC1Q96MC2 740 aa28.94■■■□□ 2.22
CCDC88C-205ENST00000553403 MKNK1Q9BUB5 465 aa28.94■■■□□ 2.22
CCDC88C-205ENST00000553403 EIF3JO75822 258 aaKnown RBP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 AKAP3O75969 853 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 PSAPP07602 524 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 PLS3P13797 630 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 MOB2Q70IA6 237 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 ATP6V0A1Q93050 837 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 NUCKS1Q9H1E3 243 aaKnown RBP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 ASCC2Q9H1I8 757 aaPredicted RBP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 TAF1DQ9H5J8 278 aaPredicted RBP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 JPH1Q9HDC5 661 aaPredicted RBP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 CEP72Q9P209 647 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 SCN4AP35499 1836 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 BACH1O14867 736 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 USO1O60763 962 aaKnown RBP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 CASQ1P31415 396 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 BAP1Q92560 729 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 GBP3Q9H0R5 595 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 SLC9A2Q9UBY0 812 aa28.93■■■□□ 2.22
CCDC88C-205ENST00000553403 MYH11P35749 1972 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 CLIC2O15247 247 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms