RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 NME1P15531 152 aaKnown RBP6.93□□□□□ -1.3
SCAF11-213ENST00000550629 EGR3Q06889 387 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 RASGRF1Q13972 1273 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 TNIP1Q15025 636 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 TTF1Q15361 905 aaPredicted RBP6.93□□□□□ -1.3
SCAF11-213ENST00000550629 LRRFIP1Q32MZ4 808 aaKnown RBP6.93□□□□□ -1.3
SCAF11-213ENST00000550629 NBPF12Q5TAG4 269 aaPredicted RBP6.93□□□□□ -1.3
SCAF11-213ENST00000550629 ZGPATQ8N5A5 531 aaKnown RBP6.93□□□□□ -1.3
SCAF11-213ENST00000550629 OTUD7AQ8TE49 926 aaPredicted RBP6.93□□□□□ -1.3
SCAF11-213ENST00000550629 CCDC120Q96HB5 630 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 KIRREL1Q96J84 757 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 ADAMTS10Q9H324 1103 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 HMG20BQ9P0W2 317 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 PCDHA11Q9Y5I1 949 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 MYO3BQ8WXR4 1341 aa6.93□□□□□ -1.3
SCAF11-213ENST00000550629 RPS12P25398 132 aaKnown RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 MCAMP43121 646 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 PRELPP51888 382 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 EIF6P56537 245 aaKnown RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 RNF4P78317 190 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 BMP2KLQ5H9B9 411 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 C9orf131Q5VYM1 1079 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 SPTY2D1Q68D10 685 aaPredicted RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 METTL16Q86W50 562 aaKnown RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 RGS22Q8NE09 1264 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 GPR101Q96P66 508 aaPredicted RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 DBNDD1Q9H9R9 158 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 RNF181Q9P0P0 153 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 KIAA1522Q9P206 1035 aaPredicted RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 TMEM59LQ9UK28 342 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 COL4A5P29400 1685 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 RFX7Q2KHR2 1363 aa6.92□□□□□ -1.3
SCAF11-213ENST00000550629 COL1A1P02452 1464 aaPredicted RBP6.92□□□□□ -1.3
SCAF11-213ENST00000550629 UNCXA6NJT0 531 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 YDJCA8MPS7 323 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.91□□□□□ -1.3
SCAF11-213ENST00000550629 TNFRSF10CO14798 259 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 VIL1P09327 827 aaKnown RBP6.91□□□□□ -1.3
SCAF11-213ENST00000550629 CCNFP41002 786 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 HK2P52789 917 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 ERVFC1P60507 584 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 CLEC16AQ2KHT3 1053 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 NBPF9Q3BBW0 867 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 TMEM67Q5HYA8 995 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 DACT2Q5SW24 774 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 TTC22Q5TAA0 569 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 TTLL5Q6EMB2 1281 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 CIAPIN1Q6FI81 312 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 SYDE1Q6ZW31 735 aaPredicted RBP6.91□□□□□ -1.3
SCAF11-213ENST00000550629 TMEM192Q8IY95 271 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 LRRC56Q8IYG6 542 aaPredicted RBP6.91□□□□□ -1.3
SCAF11-213ENST00000550629 GPC2Q8N158 579 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 AGBL3Q8NEM8 1001 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 DPF2Q92785 391 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 EVI5LQ96CN4 794 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 MRIQ9BWK5 157 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCAF11-213ENST00000550629 PAG1Q9NWQ8 432 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 MAST3O60307 1309 aa6.91□□□□□ -1.3
SCAF11-213ENST00000550629 GOLIM4O00461 696 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 CLEC3AO75596 197 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 ZFYP08048 801 aaPredicted RBP6.9□□□□□ -1.3
SCAF11-213ENST00000550629 CFPP27918 469 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 GSTO1P78417 241 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 HDLBPQ00341 1268 aaKnown RBP6.9□□□□□ -1.3
SCAF11-213ENST00000550629 CXCL9Q07325 125 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 RAD51AP2Q09MP3 1159 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 MAP3K12Q12852 859 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 NMIQ13287 307 aaPredicted RBP6.9□□□□□ -1.3
SCAF11-213ENST00000550629 SNW1Q13573 536 aaKnown RBP6.9□□□□□ -1.3
SCAF11-213ENST00000550629 MFSD14BQ5SR56 506 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 ZSCAN25Q6NSZ9 544 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 PRR23BQ6ZRT6 265 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 TMC3Q7Z5M5 1100 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 ZNF654Q8IZM8 581 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 KBTBD3Q8NAB2 608 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 SLC9A7Q96T83 725 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 GMLQ99445 158 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 ASCC2Q9H1I8 757 aaPredicted RBP6.9□□□□□ -1.3
SCAF11-213ENST00000550629 BOLA2Q9H3K6 86 aa6.9□□□□□ -1.3
SCAF11-213ENST00000550629 TIAM2Q8IVF5 1701 aa6.9□□□□□ -1.31
SCAF11-213ENST00000550629 DICER1Q9UPY3 1922 aaKnown RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 HIP1O00291 1037 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 PSMD14O00487 310 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 RAD17O75943 681 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 MAP4K4O95819 1239 aaPredicted RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 CHAF1AQ13111 956 aaPredicted RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 PAK2Q13177 524 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 TSHZ3Q63HK5 1081 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 CERS3Q8IU89 383 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 CNTROBQ8N137 903 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 CERS5Q8N5B7 392 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 ENOX1Q8TC92 643 aaKnown RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 SYTL5Q8TDW5 730 aaPredicted RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 SLC6A18Q96N87 628 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 FERD3LQ96RJ6 166 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 DNAJC2Q99543 621 aaKnown RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 HDAC8Q9BY41 377 aa6.89□□□□□ -1.31
SCAF11-213ENST00000550629 PIH1D3Q9NQM4 214 aaKnown RBP6.89□□□□□ -1.31
SCAF11-213ENST00000550629 LRP2BPQ9P2M1 347 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms