RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 H0YGN5 161 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 RNMTO43148 476 aaKnown RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 EN2P19622 333 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 RPL13P26373 211 aaKnown RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 IL13P35225 146 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 TNNT2P45379 298 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 DAB2P98082 770 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 KIF23Q02241 960 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 SLC39A6Q13433 755 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 C1orf141Q5JVX7 400 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 SULT6B1Q6IMI4 303 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 PNMA8AQ86V59 439 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 DSCC1Q9BVC3 393 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 GLIS2Q9BZE0 524 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 TAOK3Q9H2K8 898 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 PCDH18Q9HCL0 1135 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 BRMS1Q9HCU9 246 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 ZBTB1Q9Y2K1 713 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 ADAMTS7Q9UKP4 1686 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 CEP290O15078 2479 aa4.82□□□□□ -1.64
LIMA1-206ENST00000550611 COL5A3P25940 1745 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-206ENST00000550611 ANKRD26Q9UPS8 1709 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 ZNF536O15090 1300 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 MROH6A6NGR9 719 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 TNFRSF10CO14798 259 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 TLR3O15455 904 aaKnown RBP4.81□□□□□ -1.64
LIMA1-206ENST00000550611 SMARCA5O60264 1052 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-206ENST00000550611 TACR1P25103 407 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 PSMD2Q13200 908 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 SURF1Q15526 300 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 CCDC27Q2M243 656 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 TBC1D9BQ66K14 1250 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 LIMS2Q7Z4I7 341 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 CABP7Q86V35 215 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 C7orf61Q8IZ16 206 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 PEX11GQ96HA9 241 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 SLC6A18Q96N87 628 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 KLC2Q9H0B6 622 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 THSD7BQ9C0I4 1608 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 LAMA3Q16787 3333 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 ADAMTSL1Q8N6G6 1762 aa4.81□□□□□ -1.64
LIMA1-206ENST00000550611 COL15A1P39059 1388 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 HTTP42858 3142 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 DICER1Q9UPY3 1922 aaKnown RBP4.8□□□□□ -1.64
LIMA1-206ENST00000550611 KLRG2A4D1S0 409 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-206ENST00000550611 SHOXO15266 292 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 TBC1D8O95759 1140 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 SRGNP10124 158 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 NME1P15531 152 aaKnown RBP4.8□□□□□ -1.64
LIMA1-206ENST00000550611 L1CAMP32004 1257 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 NOP2P46087 812 aaKnown RBP4.8□□□□□ -1.64
LIMA1-206ENST00000550611 STYK1Q6J9G0 422 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 PRR5LQ6MZQ0 368 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 SND1Q7KZF4 910 aaKnown RBP eCLIP4.8□□□□□ -1.64
LIMA1-206ENST00000550611 USP48Q86UV5 1035 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 NETO2Q8NC67 525 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 PTCHD1Q96NR3 888 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 BCAS3Q9H6U6 928 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 PANK3Q9H999 370 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 CD248Q9HCU0 757 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 PARP2Q9UGN5 583 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 NUDT5Q9UKK9 219 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 NRXN2Q9P2S2 1712 aa4.8□□□□□ -1.64
LIMA1-206ENST00000550611 SCN4AP35499 1836 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 EYSQ5T1H1 3165 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 A0A087WZG4 1122 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 MEIS3P2A8K0S8 358 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 LAMTOR5O43504 91 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 GREM1O60565 184 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 CAMTA2O94983 1202 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 STARD3NLO95772 234 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 CYP2C8P10632 490 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 CANXP27824 592 aaKnown RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 THBS2P35442 1172 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 IL6STP40189 918 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 HUNKP57058 714 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 SMAD4Q13485 552 aaKnown RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 ICAM4Q14773 271 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 MTHFSDQ2M296 383 aaKnown RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 LRRFIP1Q32MZ4 808 aaKnown RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 TMC4Q7Z404 712 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 REXO1Q8N1G1 1221 aaKnown RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 RGS22Q8NE09 1264 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 DNERQ8NFT8 737 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 ZNF296Q8WUU4 475 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 DHRS1Q96LJ7 313 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 R3HDMLQ9H3Y0 253 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 SUCOQ9UBS9 1254 aaKnown RBP4.79□□□□□ -1.64
LIMA1-206ENST00000550611 HDAC9Q9UKV0 1011 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 FER1L6Q2WGJ9 1857 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 SLX4Q8IY92 1834 aa4.79□□□□□ -1.64
LIMA1-206ENST00000550611 TJP1Q07157 1748 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 CACNA1SQ13698 1873 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 MRC1P22897 1456 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 MINDY4BA8MYZ0 360 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 H0Y8X5 98 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 FZD9O00144 591 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 AMHP03971 560 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 KLF10Q13118 480 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 NOGQ13253 232 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms