RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 NYAP2Q9P242 653 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 CCPG1Q9ULG6 757 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 MTMR7Q9Y216 660 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 COL11A1P12107 1806 aaPredicted RBP8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 CACNA1BQ00975 2339 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 STXBP3O00186 592 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 LETM1O95202 739 aaPredicted RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 TTLL1O95922 423 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 AMHP03971 560 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 PARP1P09874 1014 aaKnown RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 CALML3P27482 149 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 SMARCA1P28370 1054 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 CDC27P30260 824 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 SLC1A4P43007 532 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 ALDH5A1P51649 535 aaPredicted RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 VCPP55072 806 aaKnown RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 TROAPQ12815 778 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 RESTQ13127 1097 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 GPM6BQ13491 265 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 IKBKEQ14164 716 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 TKFCQ3LXA3 575 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 FOXD4L6Q3SYB3 417 aaPredicted RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 GDF6Q6KF10 455 aaPredicted RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 FOXD4L3Q6VB84 417 aaPredicted RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 SLC30A10Q6XR72 485 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 TMTC3Q6ZXV5 915 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 FERMT3Q86UX7 667 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 CCDC12Q8WUD4 166 aaPredicted RBP8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 EDAQ92838 391 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 SPATA32Q96LK8 384 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 PRRX2Q99811 253 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 MYL10Q9BUA6 226 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 LMBRD1Q9NUN5 540 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 INSL6Q9Y581 213 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 PLIN4Q96Q06 1357 aa8.07□□□□□ -1.12
DEPDC4-208ENST00000549341 PARP14Q460N5 1801 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 ABHD14A-ACY1A0A1B0GW23 586 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 H0Y858 1186 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 FIBPO43427 364 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 EFCAB14O75071 495 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 CKBP12277 381 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 FDPSP14324 419 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 CTNNB1P35222 781 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 GUCY1B3Q02153 619 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 DNM1Q05193 864 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 DLX2Q07687 328 aaPredicted RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 PDE4DQ08499 809 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 SMAD4Q13485 552 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 BAATQ14032 418 aaPredicted RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 GRM4Q14833 912 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 GPNMBQ14956 572 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 SF3A1Q15459 793 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 SMAD2Q15796 467 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 NTRK3Q16288 839 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 ASPRV1Q53RT3 343 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 KCTD1Q719H9 257 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 FBXO11Q86XK2 927 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 FBXL6Q8N531 539 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 GMCL1P1Q8NEA9 526 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 CCDC148Q8NFR7 591 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 PHKBQ93100 1093 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 TMEM47Q9BQJ4 181 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 IGFLR1Q9H665 355 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 TLR9Q9NR96 1032 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 ADD3Q9UEY8 706 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 SEC63Q9UGP8 760 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 NOL7Q9UMY1 257 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 CEP131Q9UPN4 1083 aa8.06□□□□□ -1.12
DEPDC4-208ENST00000549341 TECTAO75443 2155 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 VPS13AQ96RL7 3174 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 TANC1Q9C0D5 1861 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 IGKV6D-41A0A0C4DH26 115 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 hCG_1984214I3L0E3 225 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 NFIBO00712 420 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 MBTPS2O43462 519 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 TBX10O75333 385 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 DXOO77932 396 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 UPP2O95045 317 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 CXCL10P02778 98 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 LORP23490 312 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 NDUFV1P49821 464 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 PTPN11Q06124 597 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 TRAF1Q13077 416 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 CCDC96Q2M329 555 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 GPATCH4Q5T3I0 446 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 L1TD1Q5T7N2 865 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 GALNT17Q6IS24 598 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 FAM160B2Q86V87 743 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 ZNF713Q8N859 430 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 C7orf31Q8N865 590 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 KCNG4Q8TDN1 519 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 AFG1LQ8WV93 481 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 CTAGE1Q96RT6 745 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 USB1Q9BQ65 265 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 FOXP1Q9H334 677 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 SH3GLB2Q9NR46 395 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 IL17RBQ9NRM6 502 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 FAM217BQ9NTX9 383 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 MTMR4Q9NYA4 1195 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms