RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 BORCS6Q96GS4 357 aa19.76■□□□□ 0.75
VIM-209ENST00000544301 NACC1Q96RE7 527 aa19.76■□□□□ 0.75
VIM-209ENST00000544301 IKZF4Q9H2S9 585 aa19.76■□□□□ 0.75
VIM-209ENST00000544301 PARVGQ9HBI0 331 aa19.76■□□□□ 0.75
VIM-209ENST00000544301 PGAP2Q9UHJ9 254 aa19.76■□□□□ 0.75
VIM-209ENST00000544301 KCNA3P22001 575 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 KLRC1P26715 233 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 SETQ01105 290 aaPredicted RBP19.75■□□□□ 0.75
VIM-209ENST00000544301 ZC2HC1CQ53FD0 456 aaPredicted RBP19.75■□□□□ 0.75
VIM-209ENST00000544301 TCERG1LQ5VWI1 586 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 B3GNT9Q6UX72 402 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 CCNI2Q6ZMN8 369 aaPredicted RBP19.75■□□□□ 0.75
VIM-209ENST00000544301 GBP6Q6ZN66 633 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 SPAG5Q96R06 1193 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 TSKSQ9UJT2 592 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 PCDHB13Q9Y5F0 798 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 FRMPD4Q14CM0 1322 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 SHTN1A0MZ66 631 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 N4BP1O75113 896 aaKnown RBP19.75■□□□□ 0.75
VIM-209ENST00000544301 PALMO75781 387 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 PTGER2P43116 358 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 PTK2Q05397 1052 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 FIZ1Q96SL8 496 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 PACSIN1Q9BY11 444 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 DEFB129Q9H1M3 183 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 SIX2Q9NPC8 291 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 ZNRF3Q9ULT6 936 aa19.75■□□□□ 0.75
VIM-209ENST00000544301 ZNF131P52739 623 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 GYS2P54840 703 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 MAP3K10Q02779 954 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 NFIL3Q16649 462 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 KIAA0753Q2KHM9 967 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 CCDC181Q5TID7 509 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 CCDC70Q6NSX1 233 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 ZNF571Q7Z3V5 609 aaPredicted RBP19.74■□□□□ 0.75
VIM-209ENST00000544301 AGBL3Q8NEM8 1001 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 RBM46Q8TBY0 533 aaKnown RBP19.74■□□□□ 0.75
VIM-209ENST00000544301 ZBTB9Q96C00 473 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 AGBL1Q96MI9 1066 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 TEKT3Q9BXF9 490 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 VIPAS39Q9H9C1 493 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 SMARCAL1Q9NZC9 954 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 EHD2Q9NZN4 543 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 SEL1LQ9UBV2 794 aa19.74■□□□□ 0.75
VIM-209ENST00000544301 BZW2Q9Y6E2 419 aaKnown RBP19.74■□□□□ 0.75
VIM-209ENST00000544301 IPO5O00410 1097 aaKnown RBP19.73■□□□□ 0.75
VIM-209ENST00000544301 DPEP1P16444 411 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 HSD17B4P51659 736 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 ZNF720Q7Z2F6 126 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 ZBED3Q96IU2 234 aaPredicted RBP19.73■□□□□ 0.75
VIM-209ENST00000544301 MXRA8Q9BRK3 442 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 LRRC1Q9BTT6 524 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 FBXL5Q9UKA1 691 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 GTPBP10A4D1E9 387 aaKnown RBP19.73■□□□□ 0.75
VIM-209ENST00000544301 ICAM1P05362 532 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 ASNSP08243 561 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 MYBL2P10244 700 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 INPP5BP32019 993 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 PSMC2P35998 433 aaKnown RBP19.73■□□□□ 0.75
VIM-209ENST00000544301 PAFAH1B1P43034 410 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 KSR1Q8IVT5 923 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 FAM186BQ8IYM0 893 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 VPS33BQ9H267 617 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 ACBD3Q9H3P7 528 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 KCND2Q9NZV8 630 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 GCNT4Q9P109 453 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 AJAP1Q9UKB5 411 aaPredicted RBP19.73■□□□□ 0.75
VIM-209ENST00000544301 ADAM21Q9UKJ8 722 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 PCDHGC5Q9Y5F6 944 aa19.73■□□□□ 0.75
VIM-209ENST00000544301 ZNF536O15090 1300 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 UBE4BO95155 1302 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 TNNT3P45378 269 aaPredicted RBP19.72■□□□□ 0.75
VIM-209ENST00000544301 C10orf76Q5T2E6 689 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 NIM1KQ8IY84 436 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 RIT2Q99578 217 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 LXNQ9BS40 222 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 CCPG1Q9ULG6 757 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 ODF2LQ9ULJ1 636 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 BTNL10A8MVZ5 291 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 ITGB5P18084 799 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 PRKCIP41743 596 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 MATR3P43243 847 aaKnown RBP eCLIP19.72■□□□□ 0.75
VIM-209ENST00000544301 JAM2P57087 298 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 COG2Q14746 738 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 NBPF9Q3BBW0 867 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 FAM178BQ8IXR5 827 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 GSPT2Q8IYD1 628 aaKnown RBP19.72■□□□□ 0.75
VIM-209ENST00000544301 HDAC7Q8WUI4 952 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 RUBCNQ92622 972 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 ZNF341Q9BYN7 854 aa19.72■□□□□ 0.75
VIM-209ENST00000544301 ERICH4A6NGS2 130 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 WNT10BO00744 389 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 FTCDO95954 541 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 MEI1Q5TIA1 1274 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 AEBP2Q6ZN18 517 aaPredicted RBP19.71■□□□□ 0.75
VIM-209ENST00000544301 BANK1Q8NDB2 785 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 CCDC102AQ96A19 550 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 MS4A14Q96JA4 679 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 MKNK1Q9BUB5 465 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 COL20A1Q9P218 1284 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms