RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 FAM228AQ86W67 206 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 SELENOSQ9BQE4 189 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 RUSC1Q9BVN2 902 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 SIX2Q9NPC8 291 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 KLC4Q9NSK0 619 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 SNX24Q9Y343 169 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 CHMP2AO43633 222 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLC12A3P55017 1021 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZNF543Q08ER8 600 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 ARHGAP44Q17R89 818 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 CCDC121Q6ZUS5 278 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 SEC16BQ96JE7 1060 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.29□□□□□ -0.67e-7■□□□□ 9.3
CDC42SE1-207ENST00000540998 DHX36Q9H2U1 1008 aaKnown RBP11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 MLXIPLQ9NP71 852 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 ACP6Q9NPH0 428 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 SBF2Q86WG5 1849 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 GPR75-ASB3A0A0A6YYF3 556 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 SPDYE3A6NKU9 549 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 TRAPPC3O43617 180 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 GCNT3O95395 438 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 NMT1P30419 496 aaKnown RBP11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 MAP2K2P36507 400 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 UBXN2AP68543 259 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 IFI35P80217 286 aaPredicted RBP11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 IFFO1Q0D2I5 559 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 TCP10Q12799 353 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZNF746Q6NUN9 644 aaPredicted RBP11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 C6orf89Q6UWU4 347 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZNF804AQ7Z570 1209 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 CD302Q8IX05 232 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 CUL5Q93034 780 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 MYCBPQ99417 103 aaPredicted RBP11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 BHMT2Q9H2M3 363 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 DNAJC5Q9H3Z4 198 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 NARFQ9UHQ1 456 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 DAGLAQ9Y4D2 1042 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 ABCB11O95342 1321 aa11.29□□□□□ -0.6
CDC42SE1-207ENST00000540998 C6orf229H3BNL8 230 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 ATMINO43313 823 aaPredicted RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 AFPP02771 609 aaKnown RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 XRCC5P13010 732 aaKnown RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 PLTPP55058 493 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 PPP2R2AP63151 447 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 GSTO1P78417 241 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 PSMD2Q13200 908 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 GIT2Q14161 759 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 NT5DC3Q86UY8 548 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 ATP8B4Q8TF62 1192 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 RUBCNQ92622 972 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 IQCDQ96DY2 449 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 CEP89Q96ST8 783 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 LUC7LQ9NQ29 371 aaKnown RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 POLLQ9UGP5 575 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 ARFGEF1Q9Y6D6 1849 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 PNMA6FA0A0J9YX94 578 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 ESYT2A0FGR8 921 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 F8VZ95 297 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 EVI5O60447 810 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 NFIAQ12857 509 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 QRICH1Q2TAL8 776 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 ALG3Q92685 438 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 SYN2Q92777 582 aaPredicted RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 TBC1D31Q96DN5 1066 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 CEP63Q96MT8 703 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 CCDC113Q9H0I3 377 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 CXorf56Q9H5V9 222 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 RNF14Q9UBS8 474 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 ASTN1O14525 1302 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 UBAP1LF5GYI3 381 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 H2AFZP0C0S5 128 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 CLK2P49760 499 aaKnown RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 EPHA7Q15375 998 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 H2AFVQ71UI9 128 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 MAEAQ7L5Y9 396 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 CPLX4Q7Z7G2 160 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 OLIG1Q8TAK6 271 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLC35G2Q8TBE7 412 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLC35C1Q96A29 364 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 C18orf8Q96DM3 657 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 NYXQ9GZU5 481 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 DNAJC17Q9NVM6 304 aaKnown RBP11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 PCDHA1Q9Y5I3 950 aa11.28□□□□□ -0.6
CDC42SE1-207ENST00000540998 TISP43B9A030 160 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 FAM86B1E9PN63 330 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 NR3C1P04150 777 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 FAM86B2P0C5J1 330 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 SPATA31C1P0DKV0 1188 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 FGFR4P22455 802 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 CYP2J2P51589 502 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 SEMA3FQ13275 785 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 GRAPQ13588 217 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 CTTNQ14247 550 aaKnown RBP11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 ANKRD20A8PQ5CZ79 823 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 SWT1Q5T5J6 900 aaKnown RBP11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 PPP4R3AQ6IN85 833 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 OTUD6AQ7L8S5 288 aa11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 GRAPLQ8TC17 118 aaPredicted RBP11.27□□□□□ -0.6
CDC42SE1-207ENST00000540998 KRT35Q92764 455 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms