RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TKFCQ3LXA3 575 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 TSGA10IPQ3SY00 556 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 VCPKMTQ9H867 229 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 IPO11Q9UI26 975 aaKnown RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 RGS16O15492 202 aaPredicted RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 COASYQ13057 564 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.25■□□□□ 0.03
USP3-204ENST00000540797 OR6J1Q8NGC5 347 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 EIF2AK1Q9BQI3 630 aaKnown RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 MTFR1LQ9H019 292 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 EIF3CLB5ME19 914 aaKnown RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 EIF4A3P38919 411 aaKnown RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 BEST2Q8NFU1 509 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 URGCPQ8TCY9 931 aa15.25■□□□□ 0.03
USP3-204ENST00000540797 EIF3CQ99613 913 aaKnown RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 ALDH8A1Q9H2A2 487 aaPredicted RBP15.25■□□□□ 0.03
USP3-204ENST00000540797 JPH1Q9HDC5 661 aaPredicted RBP15.24■□□□□ 0.03
USP3-204ENST00000540797 OGFRQ9NZT2 677 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 ZNF609O15014 1411 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 PRPSAP2O60256 369 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 MST1RQ04912 1400 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 MAGOHBQ96A72 148 aaKnown RBP15.24■□□□□ 0.03
USP3-204ENST00000540797 RUNDC3BQ96NL0 473 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 NRBP1Q9UHY1 535 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 POLIQ9UNA4 740 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 HUS1O60921 280 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 CELF2O95319 508 aaKnown RBP15.24■□□□□ 0.03
USP3-204ENST00000540797 SRGAP2BP0DMP2 458 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 GPC3P51654 580 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 EPHA7Q15375 998 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 CALN1Q9BXU9 219 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 SLITRK6Q9H5Y7 841 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 PPFIA1Q13136 1202 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 KRT31Q15323 416 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 ERICH1Q86X53 443 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 SPATA31D1Q6ZQQ2 1576 aa15.24■□□□□ 0.03
USP3-204ENST00000540797 CASP1P29466 404 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 KCTD6Q8NC69 237 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 PTPN22Q9Y2R2 807 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 GPR75-ASB3A0A0A6YYF3 556 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 CCL15-CCL14A0A0B4J2E2 113 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 RFX5P48382 616 aaPredicted RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 CCL15Q16663 113 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 ZNF699Q32M78 642 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 SEL1LQ9UBV2 794 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 CTNND1O60716 968 aaKnown RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 RASA1P20936 1047 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 STAT5BP51692 787 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 EXOSC10Q01780 885 aaKnown RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 MB21D1Q8N884 522 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 MRPL4Q9BYD3 311 aaKnown RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 ANAPC5Q9UJX4 755 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 NDUFAB1O14561 156 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 CIB2O75838 187 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 CETPP11597 493 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 ZNF394Q53GI3 561 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 C10orf76Q5T2E6 689 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 ANKRD13AQ8IZ07 590 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 ANKRD42Q8N9B4 389 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 DDX23Q9BUQ8 820 aaKnown RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 NHEJ1Q9H9Q4 299 aaPredicted RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 GOLGA8CPA6NN73 597 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 DYNLT1P63172 113 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 PROM2Q8N271 834 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 SLC35F6Q8N357 371 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 GTF3C2Q8WUA4 911 aaPredicted RBP15.23■□□□□ 0.03
USP3-204ENST00000540797 PRR12Q9ULL5 1215 aa15.23■□□□□ 0.03
USP3-204ENST00000540797 A6NNZ2 444 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 PP2D1A8MPX8 630 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 ENC1O14682 589 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 MCF2LO15068 1137 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 SAT1P21673 171 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 GUCY1A2P33402 732 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 GCLMP48507 274 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 TPD52P55327 224 aaPredicted RBP15.22■□□□□ 0.03
USP3-204ENST00000540797 YWHAGP61981 247 aaKnown RBP eCLIP15.22■□□□□ 0.03
USP3-204ENST00000540797 TUBB8Q3ZCM7 444 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 CEP57Q86XR8 500 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.22■□□□□ 0.03
USP3-204ENST00000540797 MUM1L1Q5H9M0 696 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 CCDC170Q8IYT3 715 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 CDKL2Q92772 493 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 ACTN1P12814 892 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 ZNF18P17022 549 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 TSPY1Q01534 308 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 KNOP1Q1ED39 458 aaKnown RBP15.22■□□□□ 0.03
USP3-204ENST00000540797 ARL13BQ3SXY8 428 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 CYFIP1Q7L576 1253 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 GAS2L3Q86XJ1 694 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 VSTM4Q8IW00 320 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 MYRIPQ8NFW9 859 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 TMEM106CQ9BVX2 250 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 DNAJC12Q9UKB3 198 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 CHGBP05060 677 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 TGFB2P61812 414 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 HDLBPQ00341 1268 aaKnown RBP15.22■□□□□ 0.03
USP3-204ENST00000540797 CCDC13Q8IYE1 715 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 MGARPQ8TDB4 240 aa15.22■□□□□ 0.03
USP3-204ENST00000540797 SKA2Q8WVK7 121 aaPredicted RBP15.22■□□□□ 0.03
USP3-204ENST00000540797 MEGF6O75095 1541 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms