RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 CCDC155Q8N6L0 562 aa17.68■□□□□ 0.42
RPAIN-206ENST00000539417 FAM167AQ96KS9 214 aa17.68■□□□□ 0.42
RPAIN-206ENST00000539417 NIFKQ9BYG3 293 aaKnown RBP17.68■□□□□ 0.42
RPAIN-206ENST00000539417 COL1A2P08123 1366 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 RSPH10B2B2RC85 870 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 RSPH10BP0C881 870 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 CLCN3P51790 818 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 ATP2C1P98194 919 aaPredicted RBP17.67■□□□□ 0.42
RPAIN-206ENST00000539417 DRP2Q13474 957 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 ECM1Q16610 540 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 XKR3Q5GH77 459 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 HABP4Q5JVS0 413 aaKnown RBP17.67■□□□□ 0.42
RPAIN-206ENST00000539417 TPH2Q8IWU9 490 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 KIAA0319LQ8IZA0 1049 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 LRRC71Q8N4P6 559 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 LINC01465Q8N7H1 131 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 NRBP2Q9NSY0 501 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 CXXC1Q9P0U4 656 aaPredicted RBP17.67■□□□□ 0.42
RPAIN-206ENST00000539417 CLIC4Q9Y696 253 aa17.67■□□□□ 0.42
RPAIN-206ENST00000539417 SOX1O00570 391 aaPredicted RBP17.66■□□□□ 0.42
RPAIN-206ENST00000539417 CDC25AP30304 524 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 FXR2P51116 673 aaKnown RBP eCLIP17.66■□□□□ 0.42
RPAIN-206ENST00000539417 GRIN1Q05586 938 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 MKRN4PQ13434 485 aaPredicted RBP17.66■□□□□ 0.42
RPAIN-206ENST00000539417 SF3A1Q15459 793 aaKnown RBP17.66■□□□□ 0.42
RPAIN-206ENST00000539417 FAM26DQ5JW98 314 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 TAF2Q6P1X5 1199 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 OTOP2Q7RTS6 562 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 RPAINQ86UA6 219 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 CATSPER3Q86XQ3 398 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 PPP1R16BQ96T49 567 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 CDHR5Q9HBB8 845 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 SZT2Q5T011 3432 aa17.66■□□□□ 0.42
RPAIN-206ENST00000539417 SMIM35A0A1B0GVV1 85 aa17.65■□□□□ 0.42
RPAIN-206ENST00000539417 CXCL10P02778 98 aa17.65■□□□□ 0.42
RPAIN-206ENST00000539417 C4orf19Q8IY42 314 aa17.65■□□□□ 0.42
RPAIN-206ENST00000539417 ZSWIM4Q9H7M6 989 aa17.65■□□□□ 0.42
RPAIN-206ENST00000539417 CDY2AQ9Y6F7 541 aa17.65■□□□□ 0.42
RPAIN-206ENST00000539417 ARID2Q68CP9 1835 aa17.65■□□□□ 0.42
RPAIN-206ENST00000539417 VTNP04004 478 aa17.64■□□□□ 0.41
RPAIN-206ENST00000539417 YWHABP31946 246 aaKnown RBP17.64■□□□□ 0.41
RPAIN-206ENST00000539417 PTPAQ15257 358 aa17.64■□□□□ 0.41
RPAIN-206ENST00000539417 FAM109BQ6ICB4 259 aaPredicted RBP17.64■□□□□ 0.41
RPAIN-206ENST00000539417 EFCAB12Q6NXP0 572 aa17.64■□□□□ 0.41
RPAIN-206ENST00000539417 METTL13Q8N6R0 699 aa17.64■□□□□ 0.41
RPAIN-206ENST00000539417 IGSF22Q8N9C0 903 aa17.64■□□□□ 0.41
RPAIN-206ENST00000539417 PIGOQ8TEQ8 1089 aa17.64■□□□□ 0.41
RPAIN-206ENST00000539417 TNPO1Q92973 898 aaKnown RBP17.64■□□□□ 0.41
RPAIN-206ENST00000539417 ZNF668Q96K58 619 aaPredicted RBP17.64■□□□□ 0.41
RPAIN-206ENST00000539417 MMTAG2Q9BU76 263 aaKnown RBP17.64■□□□□ 0.41
RPAIN-206ENST00000539417 BMP2KQ9NSY1 1161 aaPredicted RBP17.64■□□□□ 0.41
RPAIN-206ENST00000539417 FGBP02675 491 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 RFC2P35250 354 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 PRPHP41219 470 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 MRPS6P82932 125 aaKnown RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 CEBPZQ03701 1054 aaKnown RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 RASIP1Q5U651 963 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 POTEGQ6S5H5 508 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 LOXHD1Q8IVV2 1947 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 USP28Q96RU2 1077 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 SUGCTQ9HAC7 445 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 CYP26B1Q9NR63 512 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 LRWD1Q9UFC0 647 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 CEP131Q9UPN4 1083 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 MYH15Q9Y2K3 1946 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 ZDHHC9Q9Y397 364 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 IGKV6-21A0A0C4DH24 114 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 VWA3AA6NCI4 1184 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 LAD1O00515 517 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 CAND2O75155 1236 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 LYPLA2O95372 231 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 ZSCAN22P10073 491 aaPredicted RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 GHRP10912 638 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 LPIN1Q14693 890 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 TMEM266Q2M3C6 531 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 FOXD4L6Q3SYB3 417 aaPredicted RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 PSRC1Q6PGN9 363 aaPredicted RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 FOXD4L3Q6VB84 417 aaPredicted RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 DTHD1Q6ZMT9 781 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 RPUSD2Q8IZ73 545 aaKnown RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 NEK9Q8TD19 979 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 HERVK_113Q902F9 699 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 CHAMP1Q96JM3 812 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 CEP170P1Q96L14 293 aa17.63■□□□□ 0.41
RPAIN-206ENST00000539417 RNPC3Q96LT9 517 aaKnown RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 POLR3CQ9BUI4 534 aaPredicted RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 AGO3Q9H9G7 860 aaKnown RBP17.63■□□□□ 0.41
RPAIN-206ENST00000539417 PTPRSQ13332 1948 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 A0A1W2PPC1 479 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 GRXCR1A8MXD5 290 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 RPA1P27694 616 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 TBC1D8BQ0IIM8 1120 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 PDIA5Q14554 519 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 XKR9Q5GH70 373 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 DBF4BQ8NFT6 615 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 TMEM40Q8WWA1 233 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 LRCH3Q96II8 777 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 TUFT1Q9NNX1 390 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 TRPV2Q9Y5S1 764 aa17.62■□□□□ 0.41
RPAIN-206ENST00000539417 MAGEB2O15479 319 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms