RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 FAM227BQ96M60 508 aa13.88□□□□□ -0.19
YBX3-207ENST00000539204 ATP6V0A4Q9HBG4 840 aa13.88□□□□□ -0.19
YBX3-207ENST00000539204 RGS18Q9NS28 235 aa13.88□□□□□ -0.19
YBX3-207ENST00000539204 C1orf112Q9NSG2 853 aa13.88□□□□□ -0.19
YBX3-207ENST00000539204 HCSTQ9UBK5 93 aa13.88□□□□□ -0.19
YBX3-207ENST00000539204 NEDD4P46934 1319 aa13.88□□□□□ -0.19
YBX3-207ENST00000539204 EOMESO95936 686 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 ARP10275 920 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 MX1P20591 662 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 HNRNPUQ00839 825 aaKnown RBP eCLIP13.87□□□□□ -0.19
YBX3-207ENST00000539204 KRT76Q01546 638 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 SMC1AQ14683 1233 aaKnown RBP13.87□□□□□ -0.19
YBX3-207ENST00000539204 BMS1Q14692 1282 aaKnown RBP13.87□□□□□ -0.19
YBX3-207ENST00000539204 ODR4Q5SWX8 454 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 RARS2Q5T160 578 aaKnown RBP13.87□□□□□ -0.19
YBX3-207ENST00000539204 XRRA1Q6P2D8 792 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 ZC3H14Q6PJT7 736 aaKnown RBP13.87□□□□□ -0.19
YBX3-207ENST00000539204 HOMER1Q86YM7 354 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 ADAM2Q99965 735 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 ERVK-5Q9HDB9 667 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 ZSWIM5Q9P217 1185 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 PCDHA2Q9Y5H9 948 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 MYH6P13533 1939 aa13.87□□□□□ -0.19
YBX3-207ENST00000539204 C2orf71A6NGG8 1288 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 CLASP2O75122 1294 aaKnown RBP13.86□□□□□ -0.19
YBX3-207ENST00000539204 RPS6KA5O75582 802 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 SDHBP21912 280 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 PDE4AP27815 886 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 PPM1AP35813 382 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 PCNX4Q63HM2 1172 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 KIAA1841Q6NSI8 718 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 KCNT2Q6UVM3 1135 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 DCLK2Q8N568 766 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 C12orf76Q8N812 135 aaPredicted RBP13.86□□□□□ -0.19
YBX3-207ENST00000539204 TMEM87AQ8NBN3 555 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 KDM3AQ9Y4C1 1321 aa13.86□□□□□ -0.19
YBX3-207ENST00000539204 A0A0D9SFI3 127 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 C9IYK1 514 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 MGEA5O60502 916 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 ATP9AO75110 1047 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 RFX1P22670 979 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 CA8P35219 290 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 IFIT1BQ5T764 474 aaKnown RBP13.85□□□□□ -0.19
YBX3-207ENST00000539204 OTOP3Q7RTS5 596 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 ZNF589Q86UQ0 364 aaPredicted RBP13.85□□□□□ -0.19
YBX3-207ENST00000539204 RIN2Q8WYP3 895 aaPredicted RBP13.85□□□□□ -0.19
YBX3-207ENST00000539204 CDHR1Q96JP9 859 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 ZNF558Q96NG5 402 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 PIGSQ96S52 555 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 DZANK1Q9NVP4 752 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 TMEM161AQ9NX61 479 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 SPG21Q9NZD8 308 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 MAD2L2Q9UI95 211 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 DUSP12Q9UNI6 340 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 GINS2Q9Y248 185 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 NOC2LQ9Y3T9 749 aaKnown RBP13.85□□□□□ -0.19
YBX3-207ENST00000539204 FRMPD4Q14CM0 1322 aa13.85□□□□□ -0.19
YBX3-207ENST00000539204 PNMA6FA0A0J9YX94 578 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 SMIM35A0A1B0GVV1 85 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 PALM3A6NDB9 673 aaPredicted RBP13.84□□□□□ -0.19
YBX3-207ENST00000539204 B4E1Z4 1266 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 GPR182O15218 404 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 CXCL14O95715 111 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 FGFR1P11362 822 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 FAM189BP81408 668 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 ST3GAL2Q16842 350 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 KANK3Q6NY19 840 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 LRRC55Q6ZSA7 311 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 TICAM2Q86XR7 235 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 UBAC1Q9BSL1 405 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 TMEM117Q9H0C3 514 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 AZI2Q9H6S1 392 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 ELAC1Q9H777 363 aaKnown RBP13.84□□□□□ -0.19
YBX3-207ENST00000539204 KCNK12Q9HB15 430 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 WNT16Q9UBV4 365 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 ST3GAL5Q9UNP4 418 aa13.84□□□□□ -0.19
YBX3-207ENST00000539204 OTOGLQ3ZCN5 2332 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 KCNA2P16389 499 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 MFAP1P55081 439 aaKnown RBP13.83□□□□□ -0.2
YBX3-207ENST00000539204 NMIQ13287 307 aaPredicted RBP13.83□□□□□ -0.2
YBX3-207ENST00000539204 KIAA0319Q5VV43 1072 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 SMARCC2Q8TAQ2 1214 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 CUL5Q93034 780 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 GPRASP2Q96D09 838 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 RIOX1Q9H6W3 641 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 SPTBN2O15020 2390 aa13.83□□□□□ -0.2
YBX3-207ENST00000539204 FNDC1Q4ZHG4 1894 aaPredicted RBP13.82□□□□□ -0.2
YBX3-207ENST00000539204 DOCK5Q9H7D0 1870 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 HOXA2O43364 376 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 SP9P0CG40 484 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 PBX3P40426 434 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 ATXN1P54253 815 aaKnown RBP13.82□□□□□ -0.2
YBX3-207ENST00000539204 TBC1D8BQ0IIM8 1120 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 MTHFD1LQ6UB35 978 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 TMC5Q6UXY8 1006 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 ABI1Q8IZP0 508 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 GPR161Q8N6U8 529 aaKnown RBP13.82□□□□□ -0.2
YBX3-207ENST00000539204 TRAPPC12Q8WVT3 735 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 CASD1Q96PB1 797 aa13.82□□□□□ -0.2
YBX3-207ENST00000539204 KRT23Q9C075 422 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms