RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 A8MUI8 341 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 ATP5HO75947 161 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 CHN1P15882 459 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 CYP11B2P19099 503 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 TCP11X2Q5H9J9 407 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 KRT40Q6A162 431 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 SMYD1Q8NB12 490 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 ATP11CQ8NB49 1132 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 TSPYL2Q9H2G4 693 aaPredicted RBP11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 THAP9Q9H5L6 903 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 CYP39A1Q9NYL5 469 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 CHMP2BQ9UQN3 213 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 E7EWF7 191 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 MCL1Q07820 350 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 INTS8Q75QN2 995 aaKnown RBP11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 DDX23Q9BUQ8 820 aaKnown RBP11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 TIPINQ9BVW5 301 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 ISCUQ9H1K1 167 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 PCDH18Q9HCL0 1135 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 KCNMB3Q9NPA1 279 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 HELLSQ9NRZ9 838 aa11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 CNOT7Q9UIV1 285 aaKnown RBP11.77□□□□□ -0.52
CLSTN3-207ENST00000537408 A0A1W2PQC6 194 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 AKR1B10O60218 316 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 TBC1D10BQ4KMP7 808 aaPredicted RBP11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 ZNF554Q86TJ5 538 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 ZC3H18Q86VM9 953 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 RETREG2Q8NC44 543 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 CATSPER2Q96P56 530 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 PURBQ96QR8 312 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 SLX1AQ9BQ83 275 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 CNOT8Q9UFF9 292 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 VHLP40337 213 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 KIF22Q14807 665 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 KPNB1Q14974 876 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 CCDC174Q6PII3 467 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 STOX1Q6ZVD7 989 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 CHST3Q7LGC8 479 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 AGGF1Q8N302 714 aaeCLIP11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 NME8Q8N427 588 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 CCDC28BQ9BUN5 200 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 MKNK2Q9HBH9 465 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 SMARCAL1Q9NZC9 954 aa11.77□□□□□ -0.53
CLSTN3-207ENST00000537408 RFX7Q2KHR2 1363 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 O00370 1275 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 SUPT3HO75486 399 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 MLH1P40692 756 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 TCERG1LQ5VWI1 586 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 MB21D1Q8N884 522 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 STKLD1Q8NE28 680 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 WDR60Q8WVS4 1066 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 DSCC1Q9BVC3 393 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 SH2D4AQ9H788 454 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 RWDD2AQ9UIY3 292 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 MAPK8IP1Q9UQF2 711 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 RANBP6O60518 1105 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 CCDC15Q0P6D6 951 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 KLHL7Q8IXQ5 586 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 LRRC8CQ8TDW0 803 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 EAF2Q96CJ1 260 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 CRNKL1Q9BZJ0 848 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 ETNK1Q9HBU6 452 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 KLHL14Q9P2G3 628 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 ZNF148Q9UQR1 794 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 GNAZP19086 355 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 CYP27A1Q02318 531 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 BNIP1Q12981 228 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 WDR78Q5VTH9 848 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 PI16Q6UXB8 463 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 APOBEC3FQ8IUX4 373 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 MDM1Q8TC05 714 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 ADARB2Q9NS39 739 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 TUBGCP4Q9UGJ1 667 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 FBXL5Q9UKA1 691 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 ARL2BPQ9Y2Y0 163 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 NDUFB9Q9Y6M9 179 aa11.76□□□□□ -0.53
CLSTN3-207ENST00000537408 RNF113AO15541 343 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 RASSF2P50749 326 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 OR52E8Q6IFG1 317 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 KLC3Q6P597 504 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 NCCRP1Q6ZVX7 275 aaPredicted RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 MAP7D3Q8IWC1 876 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 FAM114A2Q9NRY5 505 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 TUBA8Q9NY65 449 aaPredicted RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 BARX2Q9UMQ3 279 aaPredicted RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 GLTPD2A6NH11 291 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 CCDC169A6NNP5 214 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 HNRNPRO43390 633 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 DDNO94850 711 aaPredicted RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 IREB2P48200 963 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 DNA2P51530 1060 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 PICALMQ13492 652 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.75□□□□□ -0.535e-14■■■□□ 15.6
CLSTN3-207ENST00000537408 WASF1Q92558 559 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 AGAP3Q96P47 875 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 MLXIPQ9HAP2 919 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 PCDHA13Q9Y5I0 950 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 TMEM221A6NGB7 291 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 LRRC10BA6NIK2 292 aa11.75□□□□□ -0.53
CLSTN3-207ENST00000537408 SKIV2L2P42285 1042 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms