RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 MTHFD1LQ6UB35 978 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 ZNF579Q8NAF0 562 aaKnown RBP13.5□□□□□ -0.25
CHD4-203ENST00000535717 SNX29Q8TEQ0 813 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 CEP89Q96ST8 783 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 SH2D3AQ9BRG2 576 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 PPP1R12CQ9BZL4 782 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 HIPK3Q9H422 1215 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 SRPRBQ9Y5M8 271 aaKnown RBP13.5□□□□□ -0.25
CHD4-203ENST00000535717 STK24Q9Y6E0 443 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 SPTLC2O15270 562 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 C22orf31O95567 290 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 YEATS4O95619 227 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 RAG1P15918 1043 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 LONP1P36776 959 aaKnown RBP13.49□□□□□ -0.25
CHD4-203ENST00000535717 NPEPPSP55786 919 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 RBL2Q08999 1139 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 MTERF2Q49AM1 385 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 KRT79Q5XKE5 535 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 PIGOQ8TEQ8 1089 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 AK8Q96MA6 479 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 CLIC6Q96NY7 704 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 CSRNP2Q9H175 543 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 WNT8AQ9H1J5 351 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 CYP26B1Q9NR63 512 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 CFAP45Q9UL16 551 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 CIZ1Q9ULV3 898 aaPredicted RBP13.49□□□□□ -0.25
CHD4-203ENST00000535717 PCDHA2Q9Y5H9 948 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 ATP6V1DQ9Y5K8 247 aa13.49□□□□□ -0.25
CHD4-203ENST00000535717 PITPNM1O00562 1244 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 PPP6R2O75170 966 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 CKBP12277 381 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 MUTP22033 750 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 BFSP2Q13515 415 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 SPECC1Q5M775 1068 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 TAF2Q6P1X5 1199 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 USP49Q70CQ1 688 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 OTUD6AQ7L8S5 288 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 CCDC155Q8N6L0 562 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 KRI1Q8N9T8 703 aaKnown RBP13.48□□□□□ -0.25
CHD4-203ENST00000535717 CAGE1Q8TC20 777 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 BADQ92934 168 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 CEP170P1Q96L14 293 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 IPO9Q96P70 1041 aaKnown RBP13.48□□□□□ -0.25
CHD4-203ENST00000535717 NACC1Q96RE7 527 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 FAM49AQ9H0Q0 323 aaPredicted RBP13.48□□□□□ -0.25
CHD4-203ENST00000535717 ANKEF1Q9NU02 776 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 RCOR1Q9UKL0 485 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 KIAA1024Q9UPX6 916 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 LTBP2Q14767 1821 aa13.48□□□□□ -0.25
CHD4-203ENST00000535717 SMIM35A0A1B0GVV1 85 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 MAGEB2O15479 319 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 XRCC6P12956 609 aaKnown RBP eCLIP13.47□□□□□ -0.25
CHD4-203ENST00000535717 NCLP19338 710 aaKnown RBP13.47□□□□□ -0.25
CHD4-203ENST00000535717 THPOP40225 353 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 UBA7P41226 1012 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 CCL23P55773 120 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 TBC1D8BQ0IIM8 1120 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 GRB10Q13322 594 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 ZRSR1Q15695 479 aaKnown RBP13.47□□□□□ -0.25
CHD4-203ENST00000535717 XKR9Q5GH70 373 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 HYIQ5T013 277 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 ZNF618Q5T7W0 954 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 MFSD5Q6N075 450 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 EFCAB12Q6NXP0 572 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 TRAF7Q6Q0C0 670 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 RPAINQ86UA6 219 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 CABP7Q86V35 215 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 KIAA0319LQ8IZA0 1049 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 METTL13Q8N6R0 699 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 LINC01465Q8N7H1 131 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 RETREG2Q8NC44 543 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 KCNG4Q8TDN1 519 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 DNAJB3Q8WWF6 145 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 EPSTI1Q96J88 318 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 PNMA5Q96PV4 448 aa13.47□□□□□ -0.25
CHD4-203ENST00000535717 DDX19AQ9NUU7 478 aaKnown RBP13.47□□□□□ -0.25
CHD4-203ENST00000535717 RANBP2P49792 3224 aaKnown RBP13.47□□□□□ -0.25
CHD4-203ENST00000535717 EVPLQ92817 2033 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 IGKV6-21A0A0C4DH24 114 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 RBAK-RBAKDNI3L0D1 243 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 CAND2O75155 1236 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 MAFO75444 373 aaPredicted RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 IQCF3P0C7M6 154 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 SELPP16109 830 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 MAGEA10P43363 369 aaPredicted RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 RARRES1P49788 294 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 CLCN3P51790 818 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 KRT85P78386 507 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 MDM2Q00987 491 aaPredicted RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 MKRN4PQ13434 485 aaPredicted RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 LRRC8DQ7L1W4 858 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 KCNK18Q7Z418 384 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 LRRC71Q8N4P6 559 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 LEO1Q8WVC0 666 aaPredicted RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 SYMPKQ92797 1274 aaKnown RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 SCLYQ96I15 445 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 PLIN2Q99541 437 aa13.46□□□□□ -0.25
CHD4-203ENST00000535717 LBHD1Q9BQE6 289 aaPredicted RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 DHX33Q9H6R0 707 aaKnown RBP13.46□□□□□ -0.25
CHD4-203ENST00000535717 SUGCTQ9HAC7 445 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms