RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 PTGDRQ13258 359 aa22.29■■□□□ 1.16
CPSF1-209ENST00000532725 TCTN1Q2MV58 587 aa22.29■■□□□ 1.16
CPSF1-209ENST00000532725 ANO5Q75V66 913 aa22.29■■□□□ 1.16
CPSF1-209ENST00000532725 C4orf19Q8IY42 314 aa22.29■■□□□ 1.16
CPSF1-209ENST00000532725 EIF2AK1Q9BQI3 630 aaKnown RBP22.29■■□□□ 1.16
CPSF1-209ENST00000532725 TMEM150BA6NC51 233 aa22.28■■□□□ 1.16
CPSF1-209ENST00000532725 DKC1O60832 514 aaKnown RBP eCLIP22.28■■□□□ 1.16
CPSF1-209ENST00000532725 CTTNQ14247 550 aaKnown RBP22.28■■□□□ 1.16
CPSF1-209ENST00000532725 IER5Q5VY09 327 aa22.28■■□□□ 1.16
CPSF1-209ENST00000532725 LRCH3Q96II8 777 aa22.28■■□□□ 1.16
CPSF1-209ENST00000532725 ZSWIM4Q9H7M6 989 aa22.28■■□□□ 1.16
CPSF1-209ENST00000532725 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.27■■□□□ 1.16
CPSF1-209ENST00000532725 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.27■■□□□ 1.16
CPSF1-209ENST00000532725 POTEMA6NI47 508 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 ACTN1P12814 892 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 MRPS6P82932 125 aaKnown RBP22.27■■□□□ 1.16
CPSF1-209ENST00000532725 PLEKHG4Q58EX7 1191 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 CNKSR3Q6P9H4 555 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 TPH2Q8IWU9 490 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 LINC01465Q8N7H1 131 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 LXNQ9BS40 222 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 TANC1Q9C0D5 1861 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 SEPT9Q9UHD8 586 aaPredicted RBP22.27■■□□□ 1.16
CPSF1-209ENST00000532725 CDY2AQ9Y6F7 541 aa22.27■■□□□ 1.16
CPSF1-209ENST00000532725 VPS37CA5D8V6 355 aaPredicted RBP22.26■■□□□ 1.15
CPSF1-209ENST00000532725 ZBTB39O15060 712 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 CYP4A11Q02928 519 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 TMEM62Q0P6H9 643 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 EFCAB12Q6NXP0 572 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 BRAPQ7Z569 592 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 METTL13Q8N6R0 699 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 DBF4BQ8NFT6 615 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 SH2D3AQ9BRG2 576 aa22.26■■□□□ 1.15
CPSF1-209ENST00000532725 CELF4Q9BZC1 486 aaKnown RBP22.26■■□□□ 1.15
CPSF1-209ENST00000532725 MTIF3Q9H2K0 278 aaKnown RBP22.26■■□□□ 1.15
CPSF1-209ENST00000532725 IGKV6-21A0A0C4DH24 114 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 LAD1O00515 517 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 BAIAP3O94812 1187 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 LYPLA2O95372 231 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 SPATA31C1P0DKV0 1188 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 FXR2P51116 673 aaKnown RBP eCLIP22.25■■□□□ 1.158e-8■■■□□ 16.7
CPSF1-209ENST00000532725 SMAD3P84022 425 aaKnown RBP22.25■■□□□ 1.15
CPSF1-209ENST00000532725 PDIA5Q14554 519 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 IL17AQ16552 155 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 MTERF2Q49AM1 385 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 FAM109BQ6ICB4 259 aaPredicted RBP22.25■■□□□ 1.15
CPSF1-209ENST00000532725 FERMT3Q86UX7 667 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 ZNF579Q8NAF0 562 aaKnown RBP22.25■■□□□ 1.15
CPSF1-209ENST00000532725 NEK9Q8TD19 979 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 CYP26B1Q9NR63 512 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 MTMR6Q9Y217 621 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 SLC4A7Q9Y6M7 1214 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 KDM3AQ9Y4C1 1321 aa22.25■■□□□ 1.15
CPSF1-209ENST00000532725 EVPLQ92817 2033 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 ABHD14A-ACY1A0A1B0GW23 586 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 MAFO75444 373 aaPredicted RBP22.24■■□□□ 1.15
CPSF1-209ENST00000532725 YWHABP31946 246 aaKnown RBP22.24■■□□□ 1.15
CPSF1-209ENST00000532725 PRPHP41219 470 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 NPEPPSP55786 919 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 TBC1D8BQ0IIM8 1120 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 MKRN4PQ13434 485 aaPredicted RBP22.24■■□□□ 1.15
CPSF1-209ENST00000532725 LPIN1Q14693 890 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 FBXO47Q5MNV8 452 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 PLA2G4FQ68DD2 849 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 OTUD6AQ7L8S5 288 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 CATSPER3Q86XQ3 398 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 SUGCTQ9HAC7 445 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 CDHR5Q9HBB8 845 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 TRPV2Q9Y5S1 764 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 SQORQ9Y6N5 450 aa22.24■■□□□ 1.15
CPSF1-209ENST00000532725 ZBBXA8MT70 800 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 GRXCR1A8MXD5 290 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 STX6O43752 255 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 GHRP10912 638 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 TMOD1P28289 359 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 CLCN3P51790 818 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 ATP2C1P98194 919 aaPredicted RBP22.23■■□□□ 1.15
CPSF1-209ENST00000532725 IKBKEQ14164 716 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 GPR153Q6NV75 609 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 LRRC71Q8N4P6 559 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 SEPT8Q92599 483 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 POLR3CQ9BUI4 534 aaPredicted RBP22.23■■□□□ 1.15
CPSF1-209ENST00000532725 SZT2Q5T011 3432 aa22.23■■□□□ 1.15
CPSF1-209ENST00000532725 M0QZ92 97 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 GPR32O75388 356 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 MED24O75448 989 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 XRCC6P12956 609 aaKnown RBP eCLIP22.22■■□□□ 1.15
CPSF1-209ENST00000532725 RESTQ13127 1097 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 TMEM266Q2M3C6 531 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 IGSF22Q8N9C0 903 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 PHOSPHO2Q8TCD6 241 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 CEP170P1Q96L14 293 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 AGO3Q9H9G7 860 aaKnown RBP22.22■■□□□ 1.15
CPSF1-209ENST00000532725 TUFT1Q9NNX1 390 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 PPME1Q9Y570 386 aa22.22■■□□□ 1.15
CPSF1-209ENST00000532725 A0A087WWV3 80 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 VTNP04004 478 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 RPA1P27694 616 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 WDR5P61964 334 aaKnown RBP22.21■■□□□ 1.15
CPSF1-209ENST00000532725 DRP2Q13474 957 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms