RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 FAM26FQ5R3K3 315 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 CXXC5Q7LFL8 322 aaKnown RBP5.34□□□□□ -1.55
CD44-233ENST00000531141 SP8Q8IXZ3 490 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 CARFQ8N187 725 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 ZNF526Q8TF50 670 aaPredicted RBP5.34□□□□□ -1.55
CD44-233ENST00000531141 ZCCHC14Q8WYQ9 949 aaKnown RBP5.34□□□□□ -1.55
CD44-233ENST00000531141 ERCC4Q92889 916 aaPredicted RBP5.34□□□□□ -1.55
CD44-233ENST00000531141 TACO1Q9BSH4 297 aaKnown RBP5.34□□□□□ -1.55
CD44-233ENST00000531141 AMNQ9BXJ7 453 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 OR10A5Q9H207 317 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 UCKL1Q9NWZ5 548 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 FTSJ1Q9UET6 329 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 FBXO10Q9UK96 956 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 COL4A3BPQ9Y5P4 624 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 EYA4O95677 639 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 KNG1P01042 644 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 POU3F3P20264 500 aaPredicted RBP5.33□□□□□ -1.56
CD44-233ENST00000531141 SARSP49591 514 aaKnown RBP5.33□□□□□ -1.56
CD44-233ENST00000531141 IL13RA1P78552 427 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 SMAD3P84022 425 aaKnown RBP5.33□□□□□ -1.56
CD44-233ENST00000531141 STILQ15468 1287 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 KRTAP19-4Q3LI73 84 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 TTC38Q5R3I4 469 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 TRMT10BQ6PF06 316 aaKnown RBP5.33□□□□□ -1.56
CD44-233ENST00000531141 SPATS2Q86XZ4 545 aaKnown RBP5.33□□□□□ -1.56
CD44-233ENST00000531141 PHYKPLQ8IUZ5 450 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 STPG3Q8N7X2 389 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 ZNF610Q8N9Z0 462 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 WDR48Q8TAF3 677 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 SLC5A5Q92911 643 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 L2HGDHQ9H9P8 463 aa5.33□□□□□ -1.56
CD44-233ENST00000531141 C9orf118A6NHY6 69 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 H0Y858 1186 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 GPR39O43194 453 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 IL18BPO95998 194 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 APEX1P27695 318 aaKnown RBP5.32□□□□□ -1.56
CD44-233ENST00000531141 MLLT6P55198 1093 aaPredicted RBP5.32□□□□□ -1.56
CD44-233ENST00000531141 SESN3P58005 492 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 TERF2Q15554 542 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 PTPROQ16827 1216 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 PHF19Q5T6S3 580 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 KANK2Q63ZY3 851 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 SLFN12LQ6IEE8 588 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 LRSAM1Q6UWE0 723 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 REXO1L1PQ8IX06 675 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 TP53I13Q8NBR0 393 aaPredicted RBP5.32□□□□□ -1.56
CD44-233ENST00000531141 ATL2Q8NHH9 583 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 MAML3Q96JK9 1138 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 YTHDC1Q96MU7 727 aaKnown RBP5.32□□□□□ -1.56
CD44-233ENST00000531141 PCDH12Q9NPG4 1184 aa5.32□□□□□ -1.56
CD44-233ENST00000531141 LUC7LQ9NQ29 371 aaKnown RBP5.32□□□□□ -1.56
CD44-233ENST00000531141 A0A1B0GTL3 188 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 CUTAO60888 179 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 ZSCAN22P10073 491 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 IBSPP21815 317 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 IL13P35225 146 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 ID4P47928 161 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 TMPRSS15P98073 1019 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 AMPD3Q01432 767 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 SLC6A3Q01959 620 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 MAP3K12Q12852 859 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 WDR72Q3MJ13 1102 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 PRAMEF9Q5VWM5 478 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 RNF219Q5W0B1 726 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 TIGD7Q6NT04 549 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 HDGFL2Q7Z4V5 671 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 NECAB2Q7Z6G3 386 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 ADGRG2Q8IZP9 1017 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 WDR66Q8TBY9 1149 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 ADAMTS17Q8TE56 1095 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 RTF1Q92541 710 aaKnown RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 FAM126AQ9BYI3 521 aaPredicted RBP5.31□□□□□ -1.56
CD44-233ENST00000531141 ATP8A1Q9Y2Q0 1164 aa5.31□□□□□ -1.56
CD44-233ENST00000531141 DDX3XO00571 662 aaKnown RBP eCLIP5.3□□□□□ -1.56
CD44-233ENST00000531141 KDM1AO60341 852 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 RAB11FIP3O75154 756 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 KLHL18O94889 574 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 ETV4P43268 484 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 SLURP1P55000 103 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 GJA9P57773 515 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 FAPQ12884 760 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 NFATC3Q12968 1075 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 MYBPC3Q14896 1274 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 BROXQ5VW32 411 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 TMEM200BQ69YZ2 307 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 ESPNLQ6ZVH7 1005 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 ZNF761Q86XN6 746 aaPredicted RBP5.3□□□□□ -1.56
CD44-233ENST00000531141 DDX42Q86XP3 938 aaKnown RBP eCLIP5.3□□□□□ -1.56
CD44-233ENST00000531141 SIAH1Q8IUQ4 282 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 IFNL2Q8IZJ0 200 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 CLRN3Q8NCR9 226 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 OR5AN1Q8NGI8 311 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 RPGRQ92834 1020 aaKnown RBP5.3□□□□□ -1.56
CD44-233ENST00000531141 TUBGCP5Q96RT8 1024 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 SPATA25Q9BR10 227 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 TMEM168Q9H0V1 697 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 POFUT1Q9H488 388 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 MSRAQ9UJ68 235 aa5.3□□□□□ -1.56
CD44-233ENST00000531141 ST20-MTHFSA0A0A6YYL1 179 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms