RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 RASGRP4Q8TDF6 673 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 MICAL1Q8TDZ2 1067 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 NECTIN4Q96NY8 510 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 PRR14Q9BWN1 585 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 ECHDC1Q9NTX5 307 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 ZNF215Q9UL58 517 aaPredicted RBP9.58□□□□□ -0.88
CD44-232ENST00000531118 PATJQ8NI35 1801 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 MIA3Q5JRA6 1907 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 FRYLO94915 3013 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 DDX11L8A8MPP1 907 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 NOP56O00567 594 aaKnown RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 PI15O43692 258 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 SMARCA5O60264 1052 aaPredicted RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 PPFIA3O75145 1194 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 FGF18O76093 207 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 GOLGA8HP0CJ92 632 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 STAG3L1P0CL83 205 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 MYCLP12524 364 aaPredicted RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 SCG2P13521 617 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 HOXB8P17481 243 aaPredicted RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 CD52P31358 61 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 HSD17B4P51659 736 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 ERVFC1P60507 584 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 SP2Q02086 613 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 GHRHRQ02643 423 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 QRICH1Q2TAL8 776 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 GPATCH4Q5T3I0 446 aaKnown RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 TAF2Q6P1X5 1199 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 RTP3Q9BQQ7 232 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 REPIN1Q9BWE0 567 aaKnown RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 AGO3Q9H9G7 860 aaKnown RBP9.57□□□□□ -0.88
CD44-232ENST00000531118 MLXIPQ9HAP2 919 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 TOMM22Q9NS69 142 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 HCSTQ9UBK5 93 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 ANAPC4Q9UJX5 808 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 CDY2AQ9Y6F7 541 aa9.57□□□□□ -0.88
CD44-232ENST00000531118 OPLAHO14841 1288 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 CFBP00751 764 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 HSPD1P10809 573 aaKnown RBP9.56□□□□□ -0.88
CD44-232ENST00000531118 APOBRQ0VD83 1088 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 PGM5Q15124 567 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 RRP12Q5JTH9 1297 aaKnown RBP9.56□□□□□ -0.88
CD44-232ENST00000531118 PDE12Q6L8Q7 609 aaKnown RBP9.56□□□□□ -0.88
CD44-232ENST00000531118 THNSL1Q8IYQ7 743 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 ZDHHC14Q8IZN3 488 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 COLGALT1Q8NBJ5 622 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 RDH13Q8NBN7 331 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 PANK1Q8TE04 598 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 RUBCNQ92622 972 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 CASP10Q92851 521 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 GPR20Q99678 358 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 FTHL17Q9BXU8 183 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 LRRCC1Q9C099 1032 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 UBA5Q9GZZ9 404 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 ENTPD7Q9NQZ7 604 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 TCP11L1Q9NUJ3 509 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 MRPL11Q9Y3B7 192 aaKnown RBP9.56□□□□□ -0.88
CD44-232ENST00000531118 PCDHB12Q9Y5F1 795 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 NRCAMQ92823 1304 aa9.56□□□□□ -0.88
CD44-232ENST00000531118 DOCK8Q8NF50 2099 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 ZFYVE26Q68DK2 2539 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 FGRP09769 529 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 CD46P15529 392 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 CCND2P30279 289 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 MTHFRP42898 656 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 MRPS6P82932 125 aaKnown RBP9.55□□□□□ -0.88
CD44-232ENST00000531118 ITIH3Q06033 890 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 KMT5BQ4FZB7 885 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 ZMYM1Q5SVZ6 1142 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 SPOUT1Q5T280 376 aaKnown RBP9.55□□□□□ -0.88
CD44-232ENST00000531118 KIAA1841Q6NSI8 718 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 CES5AQ6NT32 575 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 ZC3H14Q6PJT7 736 aaKnown RBP9.55□□□□□ -0.88
CD44-232ENST00000531118 METTL7BQ6UX53 244 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 RSPH3Q86UC2 560 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 RTN4RL1Q86UN2 441 aaPredicted RBP9.55□□□□□ -0.88
CD44-232ENST00000531118 DCLK2Q8N568 766 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 RIN2Q8WYP3 895 aaPredicted RBP9.55□□□□□ -0.88
CD44-232ENST00000531118 TCF25Q9BQ70 676 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 USP26Q9BXU7 913 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 ADAM7Q9H2U9 754 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 BCAS3Q9H6U6 928 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 ERVK-5Q9HDB9 667 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 AAASQ9NRG9 546 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 TMEM260Q9NX78 707 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 TUBE1Q9UJT0 475 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 DUSP12Q9UNI6 340 aa9.55□□□□□ -0.88
CD44-232ENST00000531118 CNOT1A5YKK6 2376 aaKnown RBP9.55□□□□□ -0.88
CD44-232ENST00000531118 TBKBP1A7MCY6 615 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 HIDE1A8MVS5 230 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 WEE2P0C1S8 567 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 TGFB3P10600 412 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 IBSPP21815 317 aaPredicted RBP9.54□□□□□ -0.88
CD44-232ENST00000531118 PPFIA1Q13136 1202 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 PAK2Q13177 524 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 SEMA3FQ13275 785 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 UTP14CQ5TAP6 766 aaKnown RBP9.54□□□□□ -0.88
CD44-232ENST00000531118 ADGRF4Q8IZF3 695 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 SIX5Q8N196 739 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 MRPS27Q92552 414 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms