RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	DOCK5	Q9H7D0	1870 aa		10.84	□□□□□ -0.67
CHD7-208	ENST00000528280	TRANK1	O15050	2925 aa		10.84	□□□□□ -0.67
CHD7-208	ENST00000528280	TET1	Q8NFU7	2136 aa		10.84	□□□□□ -0.67
CHD7-208	ENST00000528280	CHD7	Q9P2D1	2997 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	ENPP3	O14638	875 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	ADAMTS3	O15072	1205 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	TBX3	O15119	743 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	GPR182	O15218	404 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	BAG4	O95429	457 aa	Known RBP	10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	ERVK-21	P61565	698 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	MKRN4P	Q13434	485 aa	Predicted RBP	10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	LPIN1	Q14693	890 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	AAK1	Q2M2I8	961 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	NEK8	Q86SG6	692 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	CCDC60	Q8IWA6	550 aa	Predicted RBP	10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	EXOC8	Q8IYI6	725 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	ARNTL2	Q8WYA1	636 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	GTF3C6	Q969F1	213 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	LENG9	Q96B70	501 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	ZSCAN31	Q96LW9	406 aa	Predicted RBP	10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	MBOAT7	Q96N66	472 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	YME1L1	Q96TA2	773 aa		10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	FAM49A	Q9H0Q0	323 aa	Predicted RBP	10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	DDX25	Q9UHL0	483 aa	Known RBP	10.83	□□□□□ -0.68
CHD7-208	ENST00000528280	PSMD10	O75832	226 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	UPP2	O95045	317 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	STAG3L1	P0CL83	205 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	GHR	P10912	638 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	ATP4A	P20648	1035 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	KRT2	P35908	639 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	DNM2	P50570	870 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	CRYBB1	P53674	252 aa	Predicted RBP	10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	PAK2	Q13177	524 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	ME3	Q16798	604 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	TCTN1	Q2MV58	587 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	LETM2	Q2VYF4	491 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	MIER3	Q7Z3K6	550 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	SLFN12	Q8IYM2	578 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	KIAA0319L	Q8IZA0	1049 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	METTL13	Q8N6R0	699 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	JPH2	Q9BR39	696 aa	Predicted RBP	10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	LLPH	Q9BRT6	129 aa	Known RBP	10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	KCNJ14	Q9UNX9	436 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	RWDD3	Q9Y3V2	267 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	CACNA1A	O00555	2505 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	IGSF9B	Q9UPX0	1349 aa		10.82	□□□□□ -0.68
CHD7-208	ENST00000528280	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	LINC01553	A4QN01	128 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	EDIL3	O43854	480 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	CTDNEP1	O95476	244 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	OAT	P04181	439 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	RB1	P06400	928 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	KCNQ1	P51787	676 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	TFF2	Q03403	129 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	SAFB	Q15424	915 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	NPY5R	Q15761	445 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	PTPRO	Q16827	1216 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	INF2	Q27J81	1249 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	XKR3	Q5GH77	459 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	FAM117B	Q6P1L5	589 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	NECAB1	Q8N987	351 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	SP7	Q8TDD2	431 aa	Predicted RBP	10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	TRAPPC12	Q8WVT3	735 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	AIFM3	Q96NN9	605 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	UIMC1	Q96RL1	719 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	MAP7D2	Q96T17	732 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	NIFK	Q9BYG3	293 aa	Known RBP	10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	UNC45A	Q9H3U1	944 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	CERS4	Q9HA82	394 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	UPF2	Q9HAU5	1272 aa	Known RBP	10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	PADI3	Q9ULW8	664 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	PPME1	Q9Y570	386 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	MTCH2	Q9Y6C9	303 aa		10.81	□□□□□ -0.68
CHD7-208	ENST00000528280	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	LCHN	A4D1U4	455 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	CCNT1	O60563	726 aa	Known RBP	10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	RPS6KA5	O75582	802 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	SEC24B	O95487	1268 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	TDP2	O95551	362 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	CD52	P31358	61 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	PSMC5	P62195	406 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	TBC1D8B	Q0IIM8	1120 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	NFX1	Q12986	1120 aa	Known RBP	10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	PPP2R5C	Q13362	524 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	EFCAB12	Q6NXP0	572 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	PIK3AP1	Q6ZUJ8	805 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	FIBCD1	Q8N539	461 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	FBXO22	Q8NEZ5	403 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	ETNPPL	Q8TBG4	499 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	AGO3	Q9H9G7	860 aa	Known RBP	10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	SUGCT	Q9HAC7	445 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	C1orf112	Q9NSG2	853 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	COG5	Q9UP83	839 aa		10.8	□□□□□ -0.68
CHD7-208	ENST00000528280	MYH9	P35579	1960 aa	Known RBP	10.79	□□□□□ -0.68
CHD7-208	ENST00000528280	DDX11L8	A8MPP1	907 aa		10.79	□□□□□ -0.68
CHD7-208	ENST00000528280	ZBTB42	B2RXF5	422 aa		10.79	□□□□□ -0.68
CHD7-208	ENST00000528280	RFXAP	O00287	272 aa		10.79	□□□□□ -0.68
CHD7-208	ENST00000528280	CHMP2A	O43633	222 aa		10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms