RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 IWS1Q96ST2 819 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 SLKQ9H2G2 1235 aaPredicted RBP12.5□□□□□ -0.41
NEDD8-204ENST00000526430 NAP1L2Q9ULW6 460 aaPredicted RBP12.5□□□□□ -0.41
NEDD8-204ENST00000526430 NR2E1Q9Y466 385 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 C17orf102A2RUQ5 167 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 CTSHP09668 335 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 GHRHRQ02643 423 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 RBM23Q86U06 439 aaKnown RBP12.49□□□□□ -0.41
NEDD8-204ENST00000526430 HOMER1Q86YM7 354 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 CMTR2Q8IYT2 770 aaKnown RBP12.49□□□□□ -0.41
NEDD8-204ENST00000526430 SMARCC2Q8TAQ2 1214 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 NSUN6Q8TEA1 469 aaKnown RBP12.49□□□□□ -0.41
NEDD8-204ENST00000526430 POF1BQ8WVV4 589 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 SNX21Q969T3 373 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 ZSCAN31Q96LW9 406 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-204ENST00000526430 C16orf70Q9BSU1 422 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 S1PR5Q9H228 398 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 TLE6Q9H808 572 aa12.49□□□□□ -0.41
NEDD8-204ENST00000526430 CCDC196A0A1B0GTZ2 297 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 TREHO43280 583 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 JAK2O60674 1132 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 SRGAP2BP0DMP2 458 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 UBE3AQ05086 875 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 ANGPT1Q15389 498 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 DUSP6Q16828 381 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 PFKFB3Q16875 520 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-204ENST00000526430 WWC2Q6AWC2 1192 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 CCDC105Q8IYK2 499 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 KIAA2013Q8IYS2 634 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 KLHL23Q8NBE8 558 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 VN1R2Q8NFZ6 395 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 AIFM3Q96NN9 605 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 AMNQ9BXJ7 453 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 RNF26Q9BY78 433 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-204ENST00000526430 COL20A1Q9P218 1284 aa12.48□□□□□ -0.41
NEDD8-204ENST00000526430 MRPL42Q9Y6G3 142 aaKnown RBP12.48□□□□□ -0.41
NEDD8-204ENST00000526430 AOC1P19801 751 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 CUL4AQ13619 759 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 KCNC3Q14003 757 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 NPY5RQ15761 445 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 USH1GQ495M9 461 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 MYSM1Q5VVJ2 828 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 CWF19L1Q69YN2 538 aaKnown RBP12.47□□□□□ -0.41
NEDD8-204ENST00000526430 CCDC83Q8IWF9 413 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 CRIPAKQ8N1N5 446 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 RASGRP4Q8TDF6 673 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 GPKOWQ92917 476 aaPredicted RBP eCLIP12.47□□□□□ -0.41
NEDD8-204ENST00000526430 RRP36Q96EU6 259 aaKnown RBP12.47□□□□□ -0.41
NEDD8-204ENST00000526430 MFSD1Q9H3U5 465 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 EHMT1Q9H9B1 1298 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 GJB4Q9NTQ9 266 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 PCDHA1Q9Y5I3 950 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 MRVI1Q9Y6F6 885 aa12.47□□□□□ -0.41
NEDD8-204ENST00000526430 CACNA1IQ9P0X4 2223 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 H3BRB1 525 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 ENPP3O14638 875 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 MEIS2O14770 477 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 DHX16O60231 1041 aaKnown RBP12.46□□□□□ -0.41
NEDD8-204ENST00000526430 EIF3JO75822 258 aaKnown RBP12.46□□□□□ -0.41
NEDD8-204ENST00000526430 SMIM10L2AP0DMW4 78 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 SMIM10L2BP0DMW5 78 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 GNAT1P11488 350 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 ST3GAL2Q16842 350 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 HSDL1Q3SXM5 330 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 PDE12Q6L8Q7 609 aaKnown RBP12.46□□□□□ -0.41
NEDD8-204ENST00000526430 ANKRD54Q6NXT1 300 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 KCNV1Q6PIU1 500 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 KCNG4Q8TDN1 519 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 SLC26A6Q9BXS9 759 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 RNPEPQ9H4A4 650 aa12.46□□□□□ -0.41
NEDD8-204ENST00000526430 TUT1Q9H6E5 874 aaKnown RBP12.46□□□□□ -0.41
NEDD8-204ENST00000526430 SH2B1Q9NRF2 756 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-204ENST00000526430 ABCB11O95342 1321 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 SCG2P13521 617 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 HOXB8P17481 243 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-204ENST00000526430 HSD17B4P51659 736 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 ADAM17P78536 824 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 RBM10P98175 930 aaKnown RBP12.45□□□□□ -0.42
NEDD8-204ENST00000526430 CELF3Q5SZQ8 465 aaKnown RBP12.45□□□□□ -0.42
NEDD8-204ENST00000526430 SYCE2Q6PIF2 218 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 SYTL5Q8TDW5 730 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-204ENST00000526430 SPATA33Q96N06 139 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 NECTIN4Q96NY8 510 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 TAAR1Q96RJ0 339 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 RMDN3Q96TC7 470 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 RTP3Q9BQQ7 232 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 BARHL2Q9NY43 387 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 MIA3Q5JRA6 1907 aa12.45□□□□□ -0.42
NEDD8-204ENST00000526430 ANKRD11Q6UB99 2663 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-204ENST00000526430 STK36Q9NRP7 1315 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 FASNP49327 2511 aaKnown RBP12.44□□□□□ -0.42
NEDD8-204ENST00000526430 C2orf16Q68DN1 1984 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 M0R2N6 131 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 PER2O15055 1255 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 EDIL3O43854 480 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 CHRNA1P02708 482 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 MCM2P49736 904 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 SSRP1Q08945 709 aaKnown RBP12.44□□□□□ -0.42
NEDD8-204ENST00000526430 DTWD2Q8NBA8 298 aa12.44□□□□□ -0.42
NEDD8-204ENST00000526430 RUBCNQ92622 972 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms