RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 MAGEF1Q9HAY2 307 aa23.41■■□□□ 1.34
LSM6-207ENST00000515311 SMIM10L2AP0DMW4 78 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 SMIM10L2BP0DMW5 78 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 LIG1P18858 919 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 SNW1Q13573 536 aaKnown RBP23.4■■□□□ 1.34
LSM6-207ENST00000515311 NBPF20Q3BBV1 942 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 ZNF484Q5JVG2 852 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 PLA2G4FQ68DD2 849 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 C7orf31Q8N865 590 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 LARP4BQ92615 738 aaKnown RBP23.4■■□□□ 1.34
LSM6-207ENST00000515311 CCDC43Q96MW1 224 aaKnown RBP23.4■■□□□ 1.34
LSM6-207ENST00000515311 BHMT2Q9H2M3 363 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 STARD7Q9NQZ5 370 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 CYP26B1Q9NR63 512 aa23.4■■□□□ 1.34
LSM6-207ENST00000515311 GRIN2DO15399 1336 aa23.39■■□□□ 1.34
LSM6-207ENST00000515311 NRCAMQ92823 1304 aa23.39■■□□□ 1.34
LSM6-207ENST00000515311 TMEM150BA6NC51 233 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 RRN3P2A6NIE6 340 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 ZBTB42B2RXF5 422 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 ZNF202O95125 648 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 SLFN14P0C7P3 912 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 PLA2G4BP0C869 781 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 COL6A1P12109 1028 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 INSRRP14616 1297 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 HOXC8P31273 242 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 PTPN11Q06124 597 aaPredicted RBP23.39■■□□□ 1.33
LSM6-207ENST00000515311 PPFIA1Q13136 1202 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 XKR9Q5GH70 373 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 TRMT1LQ7Z2T5 733 aaKnown RBP23.39■■□□□ 1.33
LSM6-207ENST00000515311 SYT2Q8N9I0 419 aaPredicted RBP23.39■■□□□ 1.33
LSM6-207ENST00000515311 CEP170P1Q96L14 293 aa23.39■■□□□ 1.33
LSM6-207ENST00000515311 A0A087WWV3 80 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 A0A0U1RQG5 324 aaPredicted RBP23.38■■□□□ 1.33
LSM6-207ENST00000515311 ARHGEF35A5YM69 484 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 ACTN4O43707 911 aaKnown RBP23.38■■□□□ 1.33
LSM6-207ENST00000515311 SLC12A3P55017 1021 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 NPEPPSP55786 919 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 CHMP4BP1P59074 171 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 ITGA7Q13683 1181 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 GRIK4Q16099 956 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 LONRF3Q496Y0 759 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 CEP57L1Q8IYX8 460 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 SLC43A3Q8NBI5 491 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 VTI1AQ96AJ9 217 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 ABHD8Q96I13 439 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 CEP89Q96ST8 783 aa23.38■■□□□ 1.33
LSM6-207ENST00000515311 NR1I2O75469 434 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 MBD3O95983 291 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 GNAT1P11488 350 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 RFC5P40937 340 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 MTERF2Q49AM1 385 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 EXOC8Q8IYI6 725 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 LMBR1Q8WVP7 490 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 TIGD1Q96MW7 591 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 TNMDQ9H2S6 317 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 KBTBD4Q9NVX7 518 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 KCND2Q9NZV8 630 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 HDAC6Q9UBN7 1215 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 GTF2IRD1Q9UHL9 959 aa23.37■■□□□ 1.33
LSM6-207ENST00000515311 KINO60870 393 aaKnown RBP23.36■■□□□ 1.33
LSM6-207ENST00000515311 MCM6Q14566 821 aa23.36■■□□□ 1.33
LSM6-207ENST00000515311 KRBA2Q6ZNG9 492 aa23.36■■□□□ 1.33
LSM6-207ENST00000515311 SV2BQ7L1I2 683 aa23.36■■□□□ 1.33
LSM6-207ENST00000515311 SETD4Q9NVD3 440 aa23.36■■□□□ 1.33
LSM6-207ENST00000515311 SERTAD1Q9UHV2 236 aa23.36■■□□□ 1.33
LSM6-207ENST00000515311 C17orf102A2RUQ5 167 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 MAGEB2O15479 319 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 DGAT1O75907 488 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 SSBP05455 408 aaKnown RBP eCLIP23.35■■□□□ 1.33
LSM6-207ENST00000515311 ADAM17P78536 824 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 TBC1D8BQ0IIM8 1120 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 MARCH8Q5T0T0 291 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 KANK3Q6NY19 840 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 PADI6Q6TGC4 694 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 CNNM3Q8NE01 707 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 DIS3LQ8TF46 1054 aaKnown RBP23.35■■□□□ 1.33
LSM6-207ENST00000515311 SLC7A3Q8WY07 619 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 CCDC34Q96HJ3 373 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 JPH2Q9BR39 696 aaPredicted RBP23.35■■□□□ 1.33
LSM6-207ENST00000515311 SH2D3AQ9BRG2 576 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 LRRC27Q9C0I9 530 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 SENP6Q9GZR1 1112 aaPredicted RBP23.35■■□□□ 1.33
LSM6-207ENST00000515311 C11orf49Q9H6J7 331 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 DHX33Q9H6R0 707 aaKnown RBP23.35■■□□□ 1.33
LSM6-207ENST00000515311 DACT1Q9NYF0 836 aa23.35■■□□□ 1.33
LSM6-207ENST00000515311 MBLAC1A4D2B0 266 aaPredicted RBP23.34■■□□□ 1.33
LSM6-207ENST00000515311 ARVCFO00192 962 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 MAFO75444 373 aaPredicted RBP23.34■■□□□ 1.33
LSM6-207ENST00000515311 C22orf31O95567 290 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 POLGP54098 1239 aaPredicted RBP23.34■■□□□ 1.33
LSM6-207ENST00000515311 AMPD3Q01432 767 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 FAM47CQ5HY64 1035 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 C1orf53Q5VUE5 145 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 NECAB2Q7Z6G3 386 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 UBE2Q1Q7Z7E8 422 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 GPT2Q8TD30 523 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 TRAPPC12Q8WVT3 735 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 TUBE1Q9UJT0 475 aa23.34■■□□□ 1.33
LSM6-207ENST00000515311 TRIP12Q14669 1992 aaPredicted RBP23.34■■□□□ 1.33
LSM6-207ENST00000515311 DNAH12Q6ZR08 3092 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms