RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 POLR3GO15318 223 aaPredicted RBP16.27■□□□□ 0.2
NUP54-217ENST00000514987 ALCAMQ13740 583 aa16.27■□□□□ 0.2
NUP54-217ENST00000514987 DPY19L2P1Q6NXN4 242 aa16.27■□□□□ 0.2
NUP54-217ENST00000514987 FAM133AQ8N9E0 248 aa16.27■□□□□ 0.2
NUP54-217ENST00000514987 PRPF38AQ8NAV1 312 aaKnown RBP16.27■□□□□ 0.2
NUP54-217ENST00000514987 PIGOQ8TEQ8 1089 aa16.27■□□□□ 0.2
NUP54-217ENST00000514987 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.27■□□□□ 0.2
NUP54-217ENST00000514987 ZNF277Q9NRM2 450 aaPredicted RBP16.27■□□□□ 0.2
NUP54-217ENST00000514987 PSD3Q9NYI0 1048 aa16.27■□□□□ 0.2
NUP54-217ENST00000514987 PCDHGC5Q9Y5F6 944 aa16.27■□□□□ 0.2
NUP54-217ENST00000514987 RPTORQ8N122 1335 aa16.27■□□□□ 0.19
NUP54-217ENST00000514987 RBBP6Q7Z6E9 1792 aaKnown RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 ARHGEF35A5YM69 484 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 WDR46O15213 610 aaKnown RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 TGFB1I1O43294 461 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 TAL1P17542 331 aaPredicted RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 CYP2C19P33261 490 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 CFAP221Q4G0U5 840 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 DCAF17Q5H9S7 520 aaPredicted RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 TCERG1LQ5VWI1 586 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 CCNI2Q6ZMN8 369 aaPredicted RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 ZNF720Q7Z2F6 126 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 IRF2BP2Q7Z5L9 587 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 FAM178BQ8IXR5 827 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 FAM186BQ8IYM0 893 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 SPATA4Q8NEY3 305 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 FAM71BQ8TC56 605 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 SLC16A10Q8TF71 515 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 SLC35C1Q96A29 364 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 BORCS6Q96GS4 357 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 TLR10Q9BXR5 811 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 TMEM39BQ9GZU3 492 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 UNC45AQ9H3U1 944 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 PGAP2Q9UHJ9 254 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 CCPG1Q9ULG6 757 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 A0A087X0T9 212 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 CCDC66A2RUB6 948 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 GRID2IPA4D2P6 1211 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 CES2O00748 559 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 CHMP2AO43633 222 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 FLOT1O75955 427 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 FAM228BP0C875 321 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 MAPTP10636 758 aaKnown RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 FERP16591 822 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 SLC9A1P19634 815 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 PPP2R5AQ15172 486 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 KIAA0753Q2KHM9 967 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 EXOC4Q96A65 974 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 PDE11AQ9HCR9 933 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 INTUQ9ULD6 942 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 FRMD4BQ9Y2L6 1034 aa16.26■□□□□ 0.19
NUP54-217ENST00000514987 ZBTB12Q9Y330 459 aaPredicted RBP16.26■□□□□ 0.19
NUP54-217ENST00000514987 CCDC172P0C7W6 258 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 FDX1P10109 184 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 ARP10275 920 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 AARSP49588 968 aaKnown RBP eCLIP16.25■□□□□ 0.19
NUP54-217ENST00000514987 EN1Q05925 392 aaPredicted RBP16.25■□□□□ 0.19
NUP54-217ENST00000514987 TNFAIP1Q13829 316 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 SLC9A9Q8IVB4 645 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 COG1Q8WTW3 980 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 TMEM174Q8WUU8 243 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 VTI1AQ96AJ9 217 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 DRC1Q96MC2 740 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 TIPINQ9BVW5 301 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 DMAC2Q9NW81 257 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.25■□□□□ 0.19
NUP54-217ENST00000514987 ADAMTS1Q9UHI8 967 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 SALL4Q9UJQ4 1053 aa16.25■□□□□ 0.19
NUP54-217ENST00000514987 DBR1Q9UK59 544 aaKnown RBP16.25■□□□□ 0.19
NUP54-217ENST00000514987 ZMYM2Q9UBW7 1377 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 MYH10P35580 1976 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 A0A0U1RQG5 324 aaPredicted RBP16.24■□□□□ 0.19
NUP54-217ENST00000514987 SMCHD1A6NHR9 2005 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 P4HBP07237 508 aaKnown RBP16.24■□□□□ 0.19
NUP54-217ENST00000514987 DPEP1P16444 411 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 RFX1P22670 979 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 NMT1P30419 496 aaKnown RBP16.24■□□□□ 0.19
NUP54-217ENST00000514987 STAT1P42224 750 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 JAM2P57087 298 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 ARID5AQ03989 594 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 PTK2Q05397 1052 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 C2orf54Q08AI8 447 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 ZYXQ15942 572 aaKnown RBP16.24■□□□□ 0.19
NUP54-217ENST00000514987 ODR4Q5SWX8 454 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 TAF3Q5VWG9 929 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 NFRKBQ6P4R8 1299 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 MIGA2Q7L4E1 593 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 ANKRD13CQ8N6S4 541 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 LMBR1Q8WVP7 490 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 LXNQ9BS40 222 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 KIAA1683Q9H0B3 1180 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 GCNT4Q9P109 453 aa16.24■□□□□ 0.19
NUP54-217ENST00000514987 A0A0A6YYK5 440 aaPredicted RBP16.23■□□□□ 0.19
NUP54-217ENST00000514987 H3BQF6 201 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 CLIC2O15247 247 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 BUB1O43683 1085 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 PALMO75781 387 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 ACTN1P12814 892 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 KCNA3P22001 575 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 TNFRSF8P28908 595 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms