RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ELAC2Q9BQ52 826 aaKnown RBP13.68□□□□□ -0.22
USP53-209ENST00000514665 VCX3BQ9H321 246 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 ANAPC7Q9UJX3 599 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 C21orf2O43822 256 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 GYPCP04921 128 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 GPSM2P81274 684 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 DRAP1Q14919 205 aaPredicted RBP13.67□□□□□ -0.22
USP53-209ENST00000514665 NFIXQ14938 502 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 RHOT2Q8IXI1 618 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 SCYL3Q8IZE3 742 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 ANKRD7Q92527 254 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 MRPL47Q9HD33 250 aaKnown RBP13.67□□□□□ -0.22
USP53-209ENST00000514665 MLXIPLQ9NP71 852 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 EXOC1LA0A1B0GW35 172 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 CA4P22748 312 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 SLMAPQ14BN4 828 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 GLE1Q53GS7 698 aaKnown RBP13.67□□□□□ -0.22
USP53-209ENST00000514665 C7orf31Q8N865 590 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 XXYLT1Q8NBI6 393 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 KCNB2Q92953 911 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 TRIM11Q96F44 468 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 PPP1R16BQ96T49 567 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 FUCA2Q9BTY2 467 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 MXD3Q9BW11 206 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 RGL1Q9NZL6 768 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 CNOT8Q9UFF9 292 aaKnown RBP13.67□□□□□ -0.22
USP53-209ENST00000514665 SRGAP2CP0DJJ0 459 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 FAM20AQ96MK3 541 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.67□□□□□ -0.22
USP53-209ENST00000514665 PXDNLA1KZ92 1463 aa13.67□□□□□ -0.22
USP53-209ENST00000514665 PDE1BQ01064 536 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 MAP7D3Q8IWC1 876 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 NOA1Q8NC60 698 aaKnown RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 RAB3IPQ96QF0 476 aaPredicted RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 SMARCAL1Q9NZC9 954 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 DLC1Q96QB1 1528 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 NPHP3-ACAD11A0A0J9YXS1 232 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 ZNF233A6NK53 670 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 GIPC1O14908 333 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 SLC16A4O15374 487 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 MAGOHP61326 146 aaKnown RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 RCN2Q14257 317 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 EAPPQ56P03 285 aaPredicted RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 FAM47CQ5HY64 1035 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 NYAP1Q6ZVC0 841 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 RASGRP2Q7LDG7 609 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 PASD1Q8IV76 773 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 JPH2Q9BR39 696 aaPredicted RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 RIOK1Q9BRS2 568 aaKnown RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 SLC8A1P32418 973 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 RCSD1Q6JBY9 416 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 ARHGEF18Q6ZSZ5 1173 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 PPP4R1Q8TF05 950 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 MS4A14Q96JA4 679 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 MED10Q9BTT4 135 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 PNMA2Q9UL42 364 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 SNX12Q9UMY4 172 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 EIF3BP55884 814 aaKnown RBP13.66□□□□□ -0.22
USP53-209ENST00000514665 PTPAQ15257 358 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 FAM160B1Q5W0V3 765 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 KRT27Q7Z3Y8 459 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 FAM160B2Q86V87 743 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 DCAF4Q8WV16 495 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 RMDN3Q96TC7 470 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 AMACRQ9UHK6 382 aa13.66□□□□□ -0.22
USP53-209ENST00000514665 ASNSP08243 561 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 NXNQ6DKJ4 435 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 PDXDC1Q6P996 788 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 TBC1D1Q86TI0 1168 aaPredicted RBP13.65□□□□□ -0.22
USP53-209ENST00000514665 ZNF710Q8N1W2 664 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 CNOT10Q9H9A5 744 aaKnown RBP13.65□□□□□ -0.22
USP53-209ENST00000514665 PFDN4Q9NQP4 134 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 MYMKA6NI61 221 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 CTIFO43310 598 aaKnown RBP13.65□□□□□ -0.22
USP53-209ENST00000514665 PEX19P40855 299 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 BAG6P46379 1132 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 ST3GAL1Q11201 340 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 TROAPQ12815 778 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 KCTD2Q14681 263 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 THNSL1Q8IYQ7 743 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 SLC17A8Q8NDX2 589 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 NACA2Q9H009 215 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 ADAM22Q9P0K1 906 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 ADAMTS13Q76LX8 1427 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 REREQ9P2R6 1566 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 GMNNO75496 209 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 FTLP02792 175 aaPredicted RBP13.65□□□□□ -0.22
USP53-209ENST00000514665 SRGNP10124 158 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 MARK3P27448 753 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 NMT1P30419 496 aaKnown RBP13.65□□□□□ -0.22
USP53-209ENST00000514665 NAALADL2Q58DX5 795 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 FAM47EQ6ZV65 393 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 SULF1Q8IWU6 871 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 SH2D3CQ8N5H7 860 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 SPZ1Q9BXG8 430 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 VCXQ9H320 206 aa13.65□□□□□ -0.22
USP53-209ENST00000514665 MAGED2Q9UNF1 606 aaPredicted RBP13.65□□□□□ -0.22
USP53-209ENST00000514665 CAMTA2O94983 1202 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 ZRANB2O95218 330 aaKnown RBP eCLIP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms