RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PSMC2P35998 433 aaKnown RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 MAN2A1Q16706 1144 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 TSGA10IPQ3SY00 556 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 H2AFVQ71UI9 128 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 CLEC10AQ8IUN9 316 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 MB21D1Q8N884 522 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 SREK1Q8WXA9 508 aaKnown RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 ADPGKQ9BRR6 497 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 SPC25Q9HBM1 224 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 TUBE1Q9UJT0 475 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 H0YCG3 227 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 INO80B-WBP1J3KQ70 363 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 SNUPNO95149 360 aaKnown RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 AFPP02771 609 aaKnown RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 P4HA1P13674 534 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 CYP27A1Q02318 531 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 DHX9Q08211 1270 aaKnown RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 CYFIP2Q96F07 1278 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 INO80BQ9C086 356 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 MEGF6O75095 1541 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 PPP2R5DQ14738 602 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 Q3C1V9 767 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 MSL3Q8N5Y2 521 aaKnown RBP14.19□□□□□ -0.14
TCOF1-213ENST00000514442 TEX9Q8N6V9 391 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 FBXO41Q8TF61 875 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 SSX2IPQ9Y2D8 614 aa14.19□□□□□ -0.14
TCOF1-213ENST00000514442 TRIM49BA6NDI0 452 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 DIAPH2O60879 1101 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 MMEP08473 750 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 OSBPP22059 807 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 MIS18BP1Q6P0N0 1132 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 ZKSCAN4Q969J2 545 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-213ENST00000514442 WRNIP1Q96S55 665 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 RIC8AQ9NPQ8 531 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 AKT3Q9Y243 479 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 PPLO60437 1756 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 VPS41P49754 854 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 CHMP6Q96FZ7 201 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 LRRC1Q9BTT6 524 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 EVI5O60447 810 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 PDHA1P08559 390 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 HDLBPQ00341 1268 aaKnown RBP14.18□□□□□ -0.14
TCOF1-213ENST00000514442 KCNV2Q8TDN2 545 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 NOD2Q9HC29 1040 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 ZHX2Q9Y6X8 837 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 NR1I3Q14994 352 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 C12orf60Q5U649 245 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 SCYL2Q6P3W7 929 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 RNF207Q6ZRF8 634 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 SGMS1Q86VZ5 419 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 ADGRF4Q8IZF3 695 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 FAM133AQ8N9E0 248 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 ACCSQ96QU6 501 aa14.18□□□□□ -0.14
TCOF1-213ENST00000514442 ADD3Q9UEY8 706 aaKnown RBP14.18□□□□□ -0.14
TCOF1-213ENST00000514442 FERP16591 822 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 YWHAEP62258 255 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 RC3H1Q5TC82 1133 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 SEC16BQ96JE7 1060 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 PARVGQ9HBI0 331 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 ATP8A1Q9Y2Q0 1164 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 DAGLAQ9Y4D2 1042 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 TTLL3Q9Y4R7 772 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 F5H6K3 240 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 FSBPO95073 299 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 IFNB1P01574 187 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 MARK3P27448 753 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 TMOD1P28289 359 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 SNX16P57768 344 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 KLRC3Q07444 240 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 PREPLQ4J6C6 727 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 HHATQ5VTY9 493 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 SRBD1Q8N5C6 995 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 RNPC3Q96LT9 517 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 SENP2Q9HC62 589 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 EPB41L4AQ9HCS5 686 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 GOLGA8IPA6NC78 632 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 GOLGA8JA6NMD2 632 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 PSMD14O00487 310 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 CCNA1P78396 465 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 QRICH1Q2TAL8 776 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 KDM7AQ6ZMT4 941 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 ECT2Q9H8V3 914 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 ABCB11O95342 1321 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 E9PMD0 336 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 FOXN1O15353 648 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 MYL1P05976 194 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 AARSP49588 968 aaKnown RBP eCLIP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 MAGOHP61326 146 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 METTL16Q86W50 562 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 NSMCE1Q8WV22 266 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 MAGOHBQ96A72 148 aaKnown RBP14.17□□□□□ -0.14
TCOF1-213ENST00000514442 MED10Q9BTT4 135 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 ETAA1Q9NY74 926 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 FAM53CQ9NYF3 392 aa14.17□□□□□ -0.14
TCOF1-213ENST00000514442 FAM205CA6NFA0 338 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 ORC4O43929 436 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 IREB2P48200 963 aaKnown RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 OSTNP61366 133 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 MRPS9P82933 396 aaKnown RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 SHC4Q6S5L8 630 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms