RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 POTEJP0CG39 1038 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 MYBP10242 640 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 CREB1P16220 341 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 FKBP4Q02790 459 aaKnown RBP eCLIP13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 PARP6Q2NL67 630 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 CCDC152Q4G0S7 254 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 ZCWPW2Q504Y3 356 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 RFWD3Q6PCD5 774 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 NKX2-3Q8TAU0 364 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 NAT14Q8WUY8 206 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 NCSTNQ92542 709 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 CTNNAL1Q9UBT7 734 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 UTP11Q9Y3A2 253 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 MYH2Q9UKX2 1941 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 LAMA4Q16363 1823 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 OR6B1O95007 311 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 GJB6O95452 261 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 PLTPP55058 493 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 TIMM10P62072 90 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 TRIM67Q6ZTA4 783 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 ADAT2Q7Z6V5 191 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 C14orf80Q86SX3 495 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 NEK9Q8TD19 979 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 RASAL2Q9UJF2 1139 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 LDHAP00338 332 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 VWA3BQ502W6 1294 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 KLC3Q6P597 504 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 DAAM2Q86T65 1068 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 ANKLE1Q8NAG6 615 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 FBXO41Q8TF61 875 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 EFR3BQ9Y2G0 817 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 NPATQ14207 1427 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 POGZQ7Z3K3 1410 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 N4BP2Q86UW6 1770 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 SPDYE16A6NNV3 312 aaPredicted RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 O00370 1275 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 ADAMTS2O95450 1211 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 MTTPP55157 894 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 PHEXP78562 749 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 PROSER3Q2NL68 480 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 SH3D19Q5HYK7 790 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 UBAP2Q5T6F2 1119 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 PHF12Q96QT6 1004 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 TCHPQ9BT92 498 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 LRMDAQ9H2I8 198 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 CUEDC2Q9H467 287 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 HEY1Q9Y5J3 304 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 MROH1Q8NDA8 1641 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 RNF113AO15541 343 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 RASSF2P50749 326 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 PMS2P54278 862 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 WASHC2DQ5SRD0 308 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 CYB5R4Q7L1T6 521 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 STKLD1Q8NE28 680 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 CNOT6LQ96LI5 555 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 PUS3Q9BZE2 481 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 TAOK3Q9H2K8 898 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 TMEM120BA0PK00 339 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 FAM196BA6NMK8 535 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 R3HDM1Q15032 1099 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 MEI1Q5TIA1 1274 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 MARK2Q7KZI7 788 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 PGM2Q96G03 612 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 TGS1Q96RS0 853 aaKnown RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 PLIN2Q99541 437 aa13□□□□□ -0.33
LIMCH1-213ENST00000511496 ASCC2Q9H1I8 757 aaPredicted RBP13□□□□□ -0.33
LIMCH1-213ENST00000511496 MYH6P13533 1939 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 PASKQ96RG2 1323 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 B4E1Z4 1266 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 PSMA7O14818 248 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 SKIV2L2P42285 1042 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 LRRC8BQ6P9F7 803 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 DSTYKQ6XUX3 929 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 TAOK1Q7L7X3 1001 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 DZIP1Q86YF9 867 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 FBXL16Q8N461 479 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 LRRC37BQ96QE4 947 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 EYA1Q99502 592 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 DHX36Q9H2U1 1008 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 HTR3EA5X5Y0 456 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 TBX10O75333 385 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 GH1P01241 217 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 LMNAP02545 664 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 CCR3P51677 355 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 CDK17Q00537 523 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 OCRLQ01968 901 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 ITGA7Q13683 1181 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 NTRK3Q16288 839 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 C6orf118Q5T5N4 469 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 HSPBAP1Q96EW2 488 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 NAP1L3Q99457 506 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 CCDC134Q9H6E4 229 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 BTBD7Q9P203 1132 aa12.99□□□□□ -0.33
LIMCH1-213ENST00000511496 DYTNA2CJ06 578 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 GTPBP6O43824 516 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 AGTP01019 485 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 STX2P32856 288 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 WDR72Q3MJ13 1102 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 SYDE2Q5VT97 1194 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 KSR2Q6VAB6 950 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms