RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ADALQ6DHV7 355 aa33.08■■■□□ 2.89
LIMCH1-211ENST00000509638 CCDC43Q96MW1 224 aaKnown RBP33.08■■■□□ 2.89
LIMCH1-211ENST00000509638 TUBE1Q9UJT0 475 aa33.08■■■□□ 2.89
LIMCH1-211ENST00000509638 EVPLQ92817 2033 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 B4GALT4O60513 344 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 GNAT1P11488 350 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 PLCG1P19174 1290 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 NPEPPSP55786 919 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 CSPP1Q1MSJ5 1256 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 TPRNQ4KMQ1 711 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 OTUD6AQ7L8S5 288 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 ANKRD33Q7Z3H0 272 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 KCNK18Q7Z418 384 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 TRPV6Q9H1D0 765 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 CYP26B1Q9NR63 512 aa33.07■■■□□ 2.88
LIMCH1-211ENST00000509638 RRN3P2A6NIE6 340 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 PTGISQ16647 500 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 XKR9Q5GH70 373 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 MARCH8Q5T0T0 291 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 ZBTB10Q96DT7 871 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 CEP170P1Q96L14 293 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 ANKEF1Q9NU02 776 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 NOD1Q9Y239 953 aa33.06■■■□□ 2.88
LIMCH1-211ENST00000509638 ADAM17P78536 824 aa33.05■■■□□ 2.88
LIMCH1-211ENST00000509638 TARBP2Q15633 366 aaKnown RBP33.05■■■□□ 2.88
LIMCH1-211ENST00000509638 CCDC39Q9UFE4 941 aa33.05■■■□□ 2.88
LIMCH1-211ENST00000509638 E9PMD0 336 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 TREHO43280 583 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 CAPN15O75808 1086 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 RARRES1P49788 294 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 TLE2Q04725 743 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 CLEC17AQ6ZS10 378 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 CTAGE1Q96RT6 745 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 DNM3Q9UQ16 869 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 A0A087X0B3 334 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 TMEM87AQ8NBN3 555 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 LRRC15Q8TF66 581 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 HTATIP2Q9BUP3 242 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 BHMT2Q9H2M3 363 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 FAM13BQ9NYF5 915 aa33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 DBR1Q9UK59 544 aaKnown RBP33.04■■■□□ 2.88
LIMCH1-211ENST00000509638 MBLAC1A4D2B0 266 aaPredicted RBP33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 TLR3O15455 904 aaKnown RBP33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 C22orf31O95567 290 aa33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 XRCC6P12956 609 aaKnown RBP eCLIP33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 TBC1D8BQ0IIM8 1120 aa33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 PDILTQ8N807 584 aa33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 TOX2Q96NM4 488 aa33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 CEP89Q96ST8 783 aa33.03■■■□□ 2.88
LIMCH1-211ENST00000509638 A0A1W2PQ27 194 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 A0A1W2PQ64 194 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 A0A1W2PQD8 194 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 DCDC2CA8MYV0 355 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 CD4P01730 458 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 CMA1P23946 247 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 MTHFD1LQ6UB35 978 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 KCTD17Q8N5Z5 321 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 GBP4Q96PP9 640 aa33.02■■■□□ 2.88
LIMCH1-211ENST00000509638 ARHGEF35A5YM69 484 aa33.01■■■□□ 2.88
LIMCH1-211ENST00000509638 GOLGA6L4A6NEF3 574 aa33.01■■■□□ 2.88
LIMCH1-211ENST00000509638 EYA4O95677 639 aa33.01■■■□□ 2.88
LIMCH1-211ENST00000509638 KLRC1P26715 233 aa33.01■■■□□ 2.88
LIMCH1-211ENST00000509638 PANK2Q9BZ23 570 aa33.01■■■□□ 2.88
LIMCH1-211ENST00000509638 BMP2KQ9NSY1 1161 aaPredicted RBP33.01■■■□□ 2.88
LIMCH1-211ENST00000509638 PFKFB1P16118 471 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 RRAGBQ5VZM2 374 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 CCDC73Q6ZRK6 1079 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 SERINC5Q86VE9 423 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 FSIP1Q8NA03 581 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 MRPS27Q92552 414 aaKnown RBP33■■■□□ 2.87
LIMCH1-211ENST00000509638 PPME1Q9Y570 386 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 A0A1B0GVL5 298 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 STAT6P42226 847 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 POLGP54098 1239 aaPredicted RBP33■■■□□ 2.87
LIMCH1-211ENST00000509638 FAAP100Q0VG06 881 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 RUFY4Q6ZNE9 571 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 BLOC1S4Q9NUP1 217 aa33■■■□□ 2.87
LIMCH1-211ENST00000509638 TNRC18O15417 2968 aaPredicted RBP32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 USO1O60763 962 aaKnown RBP32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 CYP2C9P11712 490 aa32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 SLC7A3Q8WY07 619 aa32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 RAD54LQ92698 747 aa32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 STK17AQ9UEE5 414 aa32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 KCNH3Q9ULD8 1083 aa32.99■■■□□ 2.87
LIMCH1-211ENST00000509638 SSBP05455 408 aaKnown RBP eCLIP32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 CLTBP09497 229 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 RFC5P40937 340 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 NAALADL2Q58DX5 795 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 METTL13Q8N6R0 699 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 WNT8BQ93098 351 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 GOLPH3LQ9H4A5 285 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 DHX33Q9H6R0 707 aaKnown RBP32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 PCDHA2Q9Y5H9 948 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 TANC1Q9C0D5 1861 aa32.98■■■□□ 2.87
LIMCH1-211ENST00000509638 MAGEB2O15479 319 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 PLA2G4BP0C869 781 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 PTK7Q13308 1070 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 EMC2Q15006 297 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 TAF2Q6P1X5 1199 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 LRRC71Q8N4P6 559 aa32.97■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms