RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 LAPTM4AQ15012 233 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 AMHR2Q16671 573 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 UBE2SQ16763 222 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 CEP55Q53EZ4 464 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF618Q5T7W0 954 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 TRAF7Q6Q0C0 670 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 RUFY3Q7L099 469 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 NIPA1Q7RTP0 329 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 RPAINQ86UA6 219 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 MAFAQ8NHW3 353 aaPredicted RBP9.12□□□□□ -0.95
SCN1A-207ENST00000507401 TNPO1Q92973 898 aaKnown RBP9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ZMYND12Q9H0C1 365 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 SMARCAD1Q9H4L7 1026 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 KCNH7Q9NS40 1196 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ERAP1Q9NZ08 941 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 NFASCO94856 1347 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 TANC1Q9C0D5 1861 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 TREHO43280 583 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 LGR5O75473 907 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 RPLP2P05387 115 aaKnown RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 CYP3A4P08684 503 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 IFNAR1P17181 557 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 POU3F3P20264 500 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 GNA11P29992 359 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 PDIA3P30101 505 aaKnown RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 DDIT3P35638 169 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 TCF7P36402 384 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 SREBF1P36956 1147 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 THPOP40225 353 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 KCNJ6P48051 423 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 NASPP49321 788 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF445P59923 1031 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 NTRK3Q16288 839 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 KLHL40Q2TBA0 621 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 SASS6Q6UVJ0 657 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 PLPPR4Q7Z2D5 763 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 HERC6Q8IVU3 1022 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF274Q96GC6 653 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 GAS2L1Q99501 681 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 RNF26Q9BY78 433 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 ANO3Q9BYT9 981 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 C22orf23Q9BZE7 217 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 NKX2-4Q9H2Z4 354 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 C6orf50Q9HD87 102 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 PRDM9Q9NQV7 894 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 SETD4Q9NVD3 440 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 NAP1L2Q9ULW6 460 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 YBX2Q9Y2T7 364 aaKnown RBP9.11□□□□□ -0.95
SCN1A-207ENST00000507401 CYP46A1Q9Y6A2 500 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 TET1Q8NFU7 2136 aa9.11□□□□□ -0.95
SCN1A-207ENST00000507401 KAT6AQ92794 2004 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 CDH23Q9H251 3354 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 RRN3P2A6NIE6 340 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 DLL1O00548 723 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 NRG2O14511 850 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 HOXA2O43364 376 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 ATG7O95352 703 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF76P36508 570 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 SLC26A2P50443 739 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 RABGGTBP53611 331 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 WDR5P61964 334 aaKnown RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 FAM193AP78312 1265 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 RBM10P98175 930 aaKnown RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 AKAP17AQ02040 695 aaKnown RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 DMTNQ08495 405 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 MBTPS1Q14703 1052 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 PKN1Q16512 942 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 MSS51Q4VC12 460 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 PLEKHG4Q58EX7 1191 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 FAM26DQ5JW98 314 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 PPP2R2DQ66LE6 453 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 TAF2Q6P1X5 1199 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 FAM43BQ6ZT52 329 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 FAM177A1Q8N128 213 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 CYP2W1Q8TAV3 490 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 BICD2Q8TD16 824 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 CRYGNQ8WXF5 182 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 GLG1Q92896 1179 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 WNT8BQ93098 351 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 PRIMPOLQ96LW4 560 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 SDF4Q9BRK5 362 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 CCDC94Q9BW85 323 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 PRDM12Q9H4Q4 367 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 AGO4Q9HCK5 861 aaKnown RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 JPH1Q9HDC5 661 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-207ENST00000507401 SH3GLB2Q9NR46 395 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 SLC9A2Q9UBY0 812 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 DOCK5Q9H7D0 1870 aa9.1□□□□□ -0.95
SCN1A-207ENST00000507401 MYO9BQ13459 2157 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 GBF1Q92538 1859 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 IGKV6D-21A0A0A0MT36 114 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 MBLAC1A4D2B0 266 aaPredicted RBP9.09□□□□□ -0.95
SCN1A-207ENST00000507401 CA3P07451 260 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 ARP10275 920 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 MYOGP15173 224 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 USP46P62068 366 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 ARHGAP4P98171 946 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 TOB2Q14106 344 aaPredicted RBP9.09□□□□□ -0.95
SCN1A-207ENST00000507401 RSPH3Q86UC2 560 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms