RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ST5P78524 1137 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 CXCL9Q07325 125 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 KIAA1211LQ6NV74 962 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 MOB2Q70IA6 237 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 NIM1KQ8IY84 436 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 CRACR2BQ8N4Y2 399 aaPredicted RBP5.3□□□□□ -1.56
USP54-217ENST00000498213 CNBD1Q8NA66 436 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 PPP1R14AQ96A00 147 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 SGPP1Q9BX95 441 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 CARD11Q9BXL7 1154 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 KLHL25Q9H0H3 589 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 ZBTB1Q9Y2K1 713 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 MON2Q7Z3U7 1717 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 AKAP11Q9UKA4 1901 aa5.3□□□□□ -1.56
USP54-217ENST00000498213 UBE2Q2LH0YL09 131 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 STXBP3O00186 592 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 TCERG1O14776 1098 aaKnown RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 FGF10O15520 208 aaPredicted RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 EFEMP2O95967 443 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 NPR1P16066 1061 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 CANXP27824 592 aaKnown RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 VIPR1P32241 457 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 TM4SF4P48230 202 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 SEPHS1P49903 392 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 ERVFRD-1P60508 538 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 AMPD2Q01433 879 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 CAP1Q01518 475 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 KIR3DS1Q14943 382 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 DPY19L1Q2PZI1 675 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 SLC9C1Q4G0N8 1177 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 TBC1D10BQ4KMP7 808 aaPredicted RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 ZNF385BQ569K4 471 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 BICRALQ6AI39 1079 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 TMC6Q7Z403 805 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 MAFAQ8NHW3 353 aaPredicted RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 SH3TC2Q8TF17 1288 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 RELTQ969Z4 430 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 PTCHD1Q96NR3 888 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 FCRL3Q96P31 734 aaPredicted RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 HTATIP2Q9BUP3 242 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 PARD6AQ9NPB6 346 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 CNOT7Q9UIV1 285 aaKnown RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 DBR1Q9UK59 544 aaKnown RBP5.29□□□□□ -1.56
USP54-217ENST00000498213 ACSL6Q9UKU0 697 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 IRAK3Q9Y616 596 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 MUC3AQ02505 3323 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 LAMB4A4D0S4 1761 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 COL15A1P39059 1388 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 NPC1L1Q9UHC9 1359 aa5.29□□□□□ -1.56
USP54-217ENST00000498213 COL11A2P13942 1736 aaPredicted RBP5.28□□□□□ -1.56
USP54-217ENST00000498213 NRXN2Q9P2S2 1712 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 CACNA1SQ13698 1873 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 ANKRD34BA5PLL1 514 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 ERVV-2B6SEH9 535 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 NOP56O00567 594 aaKnown RBP5.28□□□□□ -1.56
USP54-217ENST00000498213 RAD17O75943 681 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 HSP90AB1P08238 724 aaKnown RBP5.28□□□□□ -1.56
USP54-217ENST00000498213 BMP7P18075 431 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 L1CAMP32004 1257 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 RBM25P49756 843 aaKnown RBP5.28□□□□□ -1.56
USP54-217ENST00000498213 CASP7P55210 303 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 TNNI3KQ59H18 835 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 EEF1DP3Q658K8 133 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 KRTAP5-3Q6L8H2 238 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 CABP7Q86V35 215 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 KLHL6Q8WZ60 621 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 DCPSQ96C86 337 aaKnown RBP5.28□□□□□ -1.56
USP54-217ENST00000498213 PSMD1Q99460 953 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 SLC12A5Q9H2X9 1139 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 ZCCHC4Q9H5U6 513 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 CGGBP1Q9UFW8 167 aaPredicted RBP5.28□□□□□ -1.56
USP54-217ENST00000498213 AKT3Q9Y243 479 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 BACE2Q9Y5Z0 518 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 PTCH2Q9Y6C5 1203 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 NCAPD2Q15021 1401 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 A0A1W2PP64 1363 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 FLT4P35916 1363 aa5.28□□□□□ -1.56
USP54-217ENST00000498213 H7C1D1 291 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 PPIP5K2O43314 1243 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 VAMP4O75379 141 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 CYP19A1P11511 503 aaPredicted RBP5.27□□□□□ -1.57
USP54-217ENST00000498213 ATF4P18848 351 aaPredicted RBP5.27□□□□□ -1.57
USP54-217ENST00000498213 TACR1P25103 407 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 COL5A3P25940 1745 aaPredicted RBP5.27□□□□□ -1.57
USP54-217ENST00000498213 GRB10Q13322 594 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 NR1I3Q14994 352 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 NCAPHQ15003 741 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 LRIT3Q3SXY7 679 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 LARP1BQ659C4 914 aaKnown RBP5.27□□□□□ -1.57
USP54-217ENST00000498213 RCSD1Q6JBY9 416 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 POMZP3Q6PJE2 187 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 ANKRD31Q8N7Z5 1873 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 TMEM52Q8NDY8 209 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 CDCA5Q96FF9 252 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 ERO1AQ96HE7 468 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 SIGLEC10Q96LC7 697 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 APBA2Q99767 749 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.27□□□□□ -1.57
USP54-217ENST00000498213 TNFRSF12AQ9NP84 129 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 PDLIM7Q9NR12 457 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms