RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FRMD3A2A2Y4 597 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 ATP2C2O75185 946 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 MAGEA9P43362 315 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 AARSP49588 968 aaKnown RBP eCLIP18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 HDLBPQ00341 1268 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 C7orf43Q8WVR3 580 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 ZNF277Q9NRM2 450 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 AJAP1Q9UKB5 411 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 LCA5LO95447 670 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 KNOP1Q1ED39 458 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 STYK1Q6J9G0 422 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 MRIQ9BWK5 157 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 STIM2Q9P246 746 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 RABGAP1Q9Y3P9 1069 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 HSF2BPO75031 334 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 NOP2P46087 812 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 CORO7P57737 925 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 KLHL30Q0D2K2 578 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 DGKZQ13574 1117 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 COG2Q14746 738 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 KLHDC7AQ5VTJ3 777 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 IGLV3-22A0A075B6J6 115 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 NAA35Q5VZE5 725 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 MAEAQ7L5Y9 396 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 KAT2BQ92831 832 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 TRIM31Q9BZY9 425 aa18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 WRAP73Q9P2S5 460 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 ARMCX3Q9UH62 379 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-210ENST00000494566 ZNF646O15015 1829 aaPredicted RBP18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 TMCO5BA8MYB1 307 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 NDUFAB1O14561 156 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 SERPING1P05155 500 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 NNTQ13423 1086 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 PLS1Q14651 629 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 KIAA0753Q2KHM9 967 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 GANQ9H2C0 597 aa18.08■□□□□ 0.49
CCDC88B-210ENST00000494566 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.08■□□□□ 0.499e-11■■■■■ 86.5
CCDC88B-210ENST00000494566 ASTN1O14525 1302 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 EBAG9O00559 213 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 TBCAO75347 108 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 ENTPD3O75355 529 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 GTF2A1P52655 376 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 LRCH2Q5VUJ6 765 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 MOXD1Q6UVY6 613 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 FLAD1Q8NFF5 587 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 IQCDQ96DY2 449 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 SH2D3AQ9BRG2 576 aa18.08■□□□□ 0.48
CCDC88B-210ENST00000494566 PITPNM2Q9BZ72 1349 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 SPDYE2BA6NHP3 402 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 FOSP01100 380 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 SPDYE6P0CI01 402 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 MCM3P25205 808 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 RINT1Q6NUQ1 792 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 CNKSR1Q969H4 720 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 FAM20AQ96MK3 541 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 VIPAS39Q9H9C1 493 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 TARSL2A2RTX5 802 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 ARP10275 920 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 RNF187Q5TA31 235 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 MYCT1Q8N699 235 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 ZNF70Q9UC06 446 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 ZBTB21Q9ULJ3 1066 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 ATRNL1Q5VV63 1379 aa18.07■□□□□ 0.48
CCDC88B-210ENST00000494566 KCNK3O14649 394 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 SLITRK3O94933 977 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 GNA14O95837 355 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 NR3C1P04150 777 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 FKBP1AP62942 108 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 PTK2Q05397 1052 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 PDE4CQ08493 712 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 ASIC2Q16515 512 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 IQCEQ6IPM2 695 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 RNPC3Q96LT9 517 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 NOX5Q96PH1 765 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 SPAG5Q96R06 1193 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 PPANQ9NQ55 473 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 TMOD2Q9NZR1 351 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 SSU72P8A0A1W2PR75 194 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 MKRN4PQ13434 485 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 TBC1D10BQ4KMP7 808 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 EPM2AIP1Q7L775 607 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 OTOP1Q7RTM1 612 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 RBM46Q8TBY0 533 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 ARHGEF10LQ9HCE6 1279 aa18.06■□□□□ 0.48
CCDC88B-210ENST00000494566 SHTN1A0MZ66 631 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 MYO1FO00160 1098 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 TBX3O15119 743 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 CIITAP33076 1130 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 COPB2P35606 906 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 MMP14P50281 582 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 MARSP56192 900 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 TUBB4BP68371 445 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 EN1Q05925 392 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 LLGL1Q15334 1064 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 DLGAP5Q15398 846 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 EDRF1Q3B7T1 1238 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 CFAP58Q5T655 872 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 BTNL9Q6UXG8 535 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 ZNF571Q7Z3V5 609 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 GPATCH11Q8N954 259 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms