RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADCY1Q08828 1119 aa17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 ZNF543Q08ER8 600 aa17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 CDAN1Q8IWY9 1227 aa17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 ATP6V0A1Q93050 837 aa17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 THOC1Q96FV9 657 aaKnown RBP17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 YIPF3Q9GZM5 350 aa17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 CNOT10Q9H9A5 744 aaKnown RBP17.64■□□□□ 0.42
CCDC88B-209ENST00000494080 NWD1Q149M9 1564 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 FAM114A2Q9NRY5 505 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 PIM2Q9P1W9 311 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 SCAF8Q9UPN6 1271 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 DAAM1Q9Y4D1 1078 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 ZNF473Q8WTR7 871 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 ANAPC4Q9UJX5 808 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 EIF4E1BA6NMX2 242 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 MAGOHP61326 146 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 IGBP1P78318 339 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 PPP2R5EQ16537 467 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 RASIP1Q5U651 963 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 MAGOHBQ96A72 148 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 AGXT2Q9BYV1 514 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 RAVER2Q9HCJ3 691 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 CD248Q9HCU0 757 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 TFR2Q9UP52 801 aa17.64■□□□□ 0.41
CCDC88B-209ENST00000494080 COASYQ13057 564 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 TRIM9Q9C026 710 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 TRIM4Q9C037 500 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 CIB2O75838 187 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 PDHBP11177 359 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 PTPAQ15257 358 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 C16orf86Q6ZW13 317 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 MAK16Q9BXY0 300 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 EPN3Q9H201 632 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 KMT5AQ9NQR1 393 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 SPATA31A6Q5VVP1 1343 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 GOLGA8IPA6NC78 632 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 GOLGA8JA6NMD2 632 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 LSP1P33241 339 aa17.63■□□□□ 0.41
CCDC88B-209ENST00000494080 PVALEFA0A1B0GWK0 134 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 TCRBV5S4A2TA0A5A2 114 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 PALMO75781 387 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 SLC10A5Q5PT55 438 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 TTC16Q8NEE8 873 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 GPR75-ASB3A0A0A6YYF3 556 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 TFRCP02786 760 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 SPP2Q13103 211 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 MESDQ14696 234 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 MTERF2Q49AM1 385 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 DPY19L2Q6NUT2 758 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 SLC7A3Q8WY07 619 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 FMO2Q99518 471 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 HAUS2Q9NVX0 235 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 KCNG1Q9UIX4 513 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 SNX12Q9UMY4 172 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 ANKRD20A3Q5VUR7 823 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 CCDC62Q6P9F0 684 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 UBR1Q8IWV7 1749 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 STXBP3O00186 592 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 MMEP08473 750 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 GYS1P13807 737 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 PDE6CP51160 858 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 NTRK3Q16288 839 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 FAM167BQ9BTA0 163 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 CCSER1Q9C0I3 900 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 PNMA2Q9UL42 364 aa17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 BZW2Q9Y6E2 419 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-209ENST00000494080 FERP16591 822 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 MDH1P40925 334 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 ZBTB8OSQ8IWT0 167 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 ACCSQ96QU6 501 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 POLLQ9UGP5 575 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 SUGT1Q9Y2Z0 365 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 IFT172Q9UG01 1749 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 ANKRD40Q6AI12 368 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 ARMC2Q8NEN0 867 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 RMDN3Q96TC7 470 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 SMARCAL1Q9NZC9 954 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 NDUFB10O96000 172 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 POLE2P56282 527 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 PEX3P56589 373 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 DPYDQ12882 1025 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 ZNF354CQ86Y25 554 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 NEK9Q8TD19 979 aa17.61■□□□□ 0.41
CCDC88B-209ENST00000494080 TOB1P50616 345 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 STK4Q13043 487 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 CUL1Q13616 776 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 SUPT20HL1Q3ZLR7 823 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 STRIP1Q5VSL9 837 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 RNF207Q6ZRF8 634 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 EP400NLQ6ZTU2 488 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 CERKQ8TCT0 537 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 DYDC2Q96IM9 177 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 NT5C1BQ96P26 610 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 ABCB11O95342 1321 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 TULP2O00295 520 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 IFNB1P01574 187 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 PPP2R2AP63151 447 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 WDR93Q6P2C0 686 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 SPATA24Q86W54 205 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 CCDC13Q8IYE1 715 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms