RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 SPATA33Q96N06 139 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 MED15Q96RN5 788 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 CEP89Q96ST8 783 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 NIFKQ9BYG3 293 aaKnown RBP14.07□□□□□ -0.16
VPS52-220ENST00000493674 NAT10Q9H0A0 1025 aaKnown RBP14.07□□□□□ -0.16
VPS52-220ENST00000493674 PDLIM7Q9NR12 457 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 BMP2KQ9NSY1 1161 aaPredicted RBP14.07□□□□□ -0.16
VPS52-220ENST00000493674 EXOC1Q9NV70 894 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 DACH1Q9UI36 760 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 ZHX1Q9UKY1 873 aaPredicted RBP14.07□□□□□ -0.16
VPS52-220ENST00000493674 ODF2LQ9ULJ1 636 aa14.07□□□□□ -0.16
VPS52-220ENST00000493674 ARHGEF35A5YM69 484 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 TMEM150BA6NC51 233 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 BACH1O14867 736 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 OATP04181 439 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 PTGS1P23219 599 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 ERCC5P28715 1186 aaPredicted RBP14.06□□□□□ -0.16
VPS52-220ENST00000493674 STK4Q13043 487 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 TARBP2Q15633 366 aaKnown RBP14.06□□□□□ -0.16
VPS52-220ENST00000493674 PADI6Q6TGC4 694 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 CCDC65Q8IXS2 484 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 DAW1Q8N136 415 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 ADSSL1Q8N142 457 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 RNF214Q8ND24 703 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 TRPV1Q8NER1 839 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 CD99L2Q8TCZ2 262 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 TIPINQ9BVW5 301 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 PANK4Q9NVE7 773 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 SRRDQ9UH36 339 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 GDAQ9Y2T3 454 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 Q9Y3F1 56 aa14.06□□□□□ -0.16
VPS52-220ENST00000493674 NOP56O00567 594 aaKnown RBP14.05□□□□□ -0.16
VPS52-220ENST00000493674 GAP43P17677 238 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 SLC26A2P50443 739 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 STAT5BP51692 787 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 TNFAIP2Q03169 654 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 FAM26FQ5R3K3 315 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 PRAMEF19Q5SWL8 479 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 PLA2G4FQ68DD2 849 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 OTUD6AQ7L8S5 288 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 LUZP1Q86V48 1076 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 SMYD4Q8IYR2 804 aaPredicted RBP14.05□□□□□ -0.16
VPS52-220ENST00000493674 TNS4Q8IZW8 715 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 FAM167AQ96KS9 214 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 HSD3B7Q9H2F3 369 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 CYP26B1Q9NR63 512 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 OLFML3Q9NRN5 406 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 PPME1Q9Y570 386 aa14.05□□□□□ -0.16
VPS52-220ENST00000493674 ANK1P16157 1881 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 A6NJR5 290 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 RSPH10B2B2RC85 870 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 LGALS2P05162 132 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 MMP3P08254 477 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 RSPH10BP0C881 870 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 IDEP14735 1019 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 PPP1R2P41236 205 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 PRCPP42785 496 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 PRMT2P55345 433 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 NPEPPSP55786 919 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 NKX3-2P78367 333 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 XKR9Q5GH70 373 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 UTP14CQ5TAP6 766 aaKnown RBP14.04□□□□□ -0.16
VPS52-220ENST00000493674 FOXR2Q6PJQ5 311 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 EPM2AIP1Q7L775 607 aaPredicted RBP14.04□□□□□ -0.16
VPS52-220ENST00000493674 GUF1Q8N442 669 aaKnown RBP14.04□□□□□ -0.16
VPS52-220ENST00000493674 AOPEPQ8N6M6 819 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 ENOX1Q8TC92 643 aaKnown RBP14.04□□□□□ -0.16
VPS52-220ENST00000493674 ATP8B4Q8TF62 1192 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 AFG1LQ8WV93 481 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 HPS3Q969F9 1004 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 FIZ1Q96SL8 496 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 SMARCAD1Q9H4L7 1026 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 SEL1LQ9UBV2 794 aa14.04□□□□□ -0.16
VPS52-220ENST00000493674 SEPT9Q9UHD8 586 aaPredicted RBP14.04□□□□□ -0.16
VPS52-220ENST00000493674 ZBTB42B2RXF5 422 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 PPFIA4O75335 1185 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 KRT18P05783 430 aaKnown RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 HOXD10P28358 340 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 MYL5Q02045 173 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 CACNB1Q02641 598 aaPredicted RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 RAD51AP2Q09MP3 1159 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 PLCB4Q15147 1175 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 BMT2Q1RMZ1 405 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 L1TD1Q5T7N2 865 aaKnown RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 MAP3K21Q5TCX8 1036 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 MFSD14CQ5VZR4 134 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 FBXO46Q6PJ61 603 aaPredicted RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 SFR1Q86XK3 245 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 TRIM50Q86XT4 487 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 OR6J1Q8NGC5 347 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 BBXQ8WY36 941 aaPredicted RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 DHTKD1Q96HY7 919 aaPredicted RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 C16orf70Q9BSU1 422 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 FGFBP2Q9BYJ0 223 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 MCOLN1Q9GZU1 580 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 DHX33Q9H6R0 707 aaKnown RBP14.03□□□□□ -0.16
VPS52-220ENST00000493674 AZI2Q9H6S1 392 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 XPNPEP1Q9NQW7 623 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 RWDD2AQ9UIY3 292 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 FAM184BQ9ULE4 1060 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms