RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 NAV2Q8IVL1 2488 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 ZFYVE26Q68DK2 2539 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 TMEM229AB2RXF0 380 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 CTAGE5O15320 804 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 MAFGO15525 162 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 SIAH2O43255 324 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 DUSP11O75319 330 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 CDKL5O76039 1030 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 DEXIO95424 95 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 LARGE1O95461 756 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 CFBP00751 764 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 NR3C2P08235 984 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 TGFB3P10600 412 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 AKR1A1P14550 325 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 CST5P28325 142 aaPredicted RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 WEE1P30291 646 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 ICAM3P32942 547 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 CCT2P78371 535 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 DHX9Q08211 1270 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 SSRP1Q08945 709 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 TRIM60Q495X7 471 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 PRAMEF19Q5SWL8 479 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 GALNT17Q6IS24 598 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 CPLX2Q6PUV4 134 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 SPNS2Q8IVW8 549 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 DAGLBQ8NCG7 672 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 NSUN7Q8NE18 718 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 KLHDC9Q8NEP7 349 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 HERVK_113Q902F9 699 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 PHKBQ93100 1093 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 EMID1Q96A84 441 aaPredicted RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 INPP4AQ96PE3 977 aaPredicted RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 RMDN3Q96TC7 470 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 TSEN34Q9BSV6 310 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 UPF3AQ9H1J1 476 aaKnown RBP7.71□□□□□ -1.18
VPS52-219ENST00000493379 PXMP2Q9NR77 195 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 TMPRSS4Q9NRS4 437 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 ZNF358Q9NW07 568 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 FAM184BQ9ULE4 1060 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 CNPY2Q9Y2B0 182 aa7.71□□□□□ -1.18
VPS52-219ENST00000493379 hCG_1642624A0A1W2PR95 340 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 SMCO2A6NFE2 343 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 NKRFO15226 690 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS52-219ENST00000493379 DCXO43602 365 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 EDIL3O43854 480 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 ADAMTS4O75173 837 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 CYP3A4P08684 503 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 CALML3P27482 149 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 GNA11P29992 359 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 CIITAP33076 1130 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 GJA9P57773 515 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 MRPS9P82933 396 aaKnown RBP7.7□□□□□ -1.18
VPS52-219ENST00000493379 AP3B2Q13367 1082 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 PGM5Q15124 567 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 STXBP2Q15833 593 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 CCDC144BQ3MJ40 725 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 DUSP28Q4G0W2 176 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 C1orf53Q5VUE5 145 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 PCNX4Q63HM2 1172 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 KCNV1Q6PIU1 500 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 USP17L6PQ6QN14 398 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 FAM178BQ8IXR5 827 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 TRIM22Q8IYM9 498 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 CCDC12Q8WUD4 166 aaPredicted RBP7.7□□□□□ -1.18
VPS52-219ENST00000493379 CUL5Q93034 780 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 MPHOSPH6Q99547 160 aaKnown RBP7.7□□□□□ -1.18
VPS52-219ENST00000493379 PHF20Q9BVI0 1012 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 ALG13Q9NP73 1137 aaKnown RBP7.7□□□□□ -1.18
VPS52-219ENST00000493379 CYLDQ9NQC7 956 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 YBX2Q9Y2T7 364 aaKnown RBP7.7□□□□□ -1.18
VPS52-219ENST00000493379 GCN1Q92616 2671 aaKnown RBP7.7□□□□□ -1.18
VPS52-219ENST00000493379 KMT2EQ8IZD2 1858 aa7.7□□□□□ -1.18
VPS52-219ENST00000493379 SPATA31C2B4DYI2 1134 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 CPLX1O14810 134 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 ADCY6O43306 1168 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 ADH1CP00326 375 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 HOXD8P13378 290 aaPredicted RBP7.69□□□□□ -1.18
VPS52-219ENST00000493379 HOXA13P31271 388 aaPredicted RBP7.69□□□□□ -1.18
VPS52-219ENST00000493379 SREBF1P36956 1147 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 AKAP17AQ02040 695 aaKnown RBP7.69□□□□□ -1.18
VPS52-219ENST00000493379 CUL4AQ13619 759 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 ARHGEF16Q5VV41 709 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 NIPA1Q7RTP0 329 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 DGLUCYQ7Z3D6 616 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 HEATR3Q7Z4Q2 680 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 ARRDC4Q8NCT1 418 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 BICD2Q8TD16 824 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 SCFD2Q8WU76 684 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 WASF1Q92558 559 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 ATOH1Q92858 354 aaPredicted RBP7.69□□□□□ -1.18
VPS52-219ENST00000493379 SNX21Q969T3 373 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 RMDN1Q96DB5 314 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 MFSD14AQ96MC6 490 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 SENP7Q9BQF6 1050 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.69□□□□□ -1.183e-6■■■■□ 22
VPS52-219ENST00000493379 SLC26A6Q9BXS9 759 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 C6orf50Q9HD87 102 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 PDGFCQ9NRA1 345 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 EGFL7Q9UHF1 273 aa7.69□□□□□ -1.18
VPS52-219ENST00000493379 DDX41Q9UJV9 622 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms