RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 LCORLQ8N3X6 602 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 GIMAP8Q8ND71 665 aaPredicted RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 LRRN4CLQ8ND94 238 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 OR13H1Q8NG92 308 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ERGIC2Q96RQ1 377 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 EIF3CQ99613 913 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 TTYH3Q9C0H2 523 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 LRRC27Q9C0I9 530 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 C7orf69Q9H7B7 122 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ARMT1Q9H993 441 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ZNF287Q9HBT7 754 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 SEC31BQ9NQW1 1179 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 DISC1Q9NRI5 854 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 KBTBD4Q9NVX7 518 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 LRP2BPQ9P2M1 347 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 ASAP1Q9ULH1 1129 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 MYO6Q9UM54 1294 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 KCNJ14Q9UNX9 436 aa6.5□□□□□ -1.37
VPS41-214ENST00000490924 LUC7L2Q9Y383 392 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 EPN1Q9Y6I3 576 aaPredicted RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 OAS3Q9Y6K5 1087 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 ATXN2Q99700 1313 aaKnown RBP6.5□□□□□ -1.37
VPS41-214ENST00000490924 COL1A1P02452 1464 aaPredicted RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 NUP98P52948 1817 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 ESYT2A0FGR8 921 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 KCNJ18B7U540 433 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 FSCN2O14926 492 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 FOXN1O15353 648 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 TEX33O43247 280 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 CAMTA2O94983 1202 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 LCA5LO95447 670 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 NTSR2O95665 410 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 FGFR1OPO95684 399 aaKnown RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 RPN1P04843 607 aaKnown RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 RPLP1P05386 114 aaKnown RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 CYP7A1P22680 504 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 ANXA13P27216 316 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 KRT9P35527 623 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 FXR1P51114 621 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS41-214ENST00000490924 USP14P54578 494 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 HNRNPH2P55795 449 aaKnown RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 EVA1CP58658 441 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 AMPD3Q01432 767 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 APBA1Q02410 837 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 GRIN1Q05586 938 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 KCNJ12Q14500 433 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SEPT2Q15019 361 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SWI5Q1ZZU3 235 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 CAVIN4Q5BKX8 364 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 ZNF569Q5MCW4 686 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 EMC10Q5UCC4 262 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SPTY2D1Q68D10 685 aaPredicted RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 FBXO33Q7Z6M2 555 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 TRIM42Q8IWZ5 723 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 AMOTL1Q8IY63 956 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 C4orf32Q8N8J7 132 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 TRIM58Q8NG06 486 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SYN2Q92777 582 aaPredicted RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 SMARCC1Q92922 1105 aaPredicted RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 UBL7Q96S82 380 aaPredicted RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 CRNKL1Q9BZJ0 848 aaKnown RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 ANKRD2Q9GZV1 360 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 CCDC87Q9NVE4 849 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SLAIN2Q9P270 581 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 PCDHA4Q9UN74 947 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 ZBTB1Q9Y2K1 713 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 CCDC9Q9Y3X0 531 aaKnown RBP6.49□□□□□ -1.37
VPS41-214ENST00000490924 JRKLQ9Y4A0 524 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 KCNMB2Q9Y691 235 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 TACC3Q9Y6A5 838 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SAR1BQ9Y6B6 198 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 KIAA1551Q9HCM1 1747 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 MAST2Q6P0Q8 1798 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 SCN7AQ01118 1682 aa6.49□□□□□ -1.37
VPS41-214ENST00000490924 CACNA1SQ13698 1873 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 A0A087X0B3 334 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 PVALEFA0A1B0GWK0 134 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 CES2O00748 559 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 ZEB2O60315 1214 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 SHOX2O60902 331 aaPredicted RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 EPB41P11171 864 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 TCP1P17987 556 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 RXRAP19793 462 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 CCNE1P24864 410 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 ERVK-24P63145 666 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 CHRNDQ07001 517 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 RAD51AP2Q09MP3 1159 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 CASP8Q14790 479 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 COX20Q5RI15 118 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 ISM2Q6H9L7 571 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 TTI2Q6NXR4 508 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 EMBQ6PCB8 327 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 TXNDC11Q6PKC3 985 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 DTHD1Q6ZMT9 781 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 C15orf52Q6ZUT6 534 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 SPATS2Q86XZ4 545 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 BLIDQ8IZY5 108 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 SLC35F6Q8N357 371 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 MMGT1Q8N4V1 131 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 RNF10Q8N5U6 811 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms