RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 NEK9Q8TD19 979 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 BBXQ8WY36 941 aaPredicted RBP11.74□□□□□ -0.53
TTC28-207ENST00000490475 FAM167AQ96KS9 214 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 ZNF577Q9BSK1 485 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 RNF26Q9BY78 433 aaPredicted RBP11.74□□□□□ -0.53
TTC28-207ENST00000490475 ZNF302Q9NR11 478 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 C1orf112Q9NSG2 853 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 PRKAG3Q9UGI9 489 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 LRFN2Q9ULH4 789 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 TELO2Q9Y4R8 837 aa11.74□□□□□ -0.53
TTC28-207ENST00000490475 CPLX1O14810 134 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 ADAMTS3O15072 1205 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 MAGEB2O15479 319 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 PFKFB2O60825 505 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 PSAPP07602 524 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 ALADP13716 330 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 KLRC1P26715 233 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 TMOD1P28289 359 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 CD52P31358 61 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 RBM25P49756 843 aaKnown RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 SSRP1Q08945 709 aaKnown RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 SCRN1Q12765 414 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 ITGB3BPQ13352 177 aaPredicted RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 MYO7AQ13402 2215 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 COL19A1Q14993 1142 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 ANKRD1Q15327 319 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 ME3Q16798 604 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 CSPP1Q1MSJ5 1256 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 TMEM31Q5JXX7 168 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 PTCRAQ6ISU1 281 aaPredicted RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 LOXHD1Q8IVV2 1947 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 FAM178BQ8IXR5 827 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 CKAP2LQ8IYA6 745 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 TRIM22Q8IYM9 498 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 NECAB1Q8N987 351 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 NECAB3Q96P71 396 aaPredicted RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 POP1Q99575 1024 aaKnown RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 SLKQ9H2G2 1235 aaPredicted RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 RC3H2Q9HBD1 1191 aaKnown RBP11.73□□□□□ -0.53
TTC28-207ENST00000490475 SH3GLB2Q9NR46 395 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 AAASQ9NRG9 546 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 PADI3Q9ULW8 664 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 HCN4Q9Y3Q4 1203 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 PCDHA10Q9Y5I2 948 aa11.73□□□□□ -0.53
TTC28-207ENST00000490475 EVPLQ92817 2033 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 GRXCR2A6NFK2 248 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 GPR37L1O60883 481 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 LARGE1O95461 756 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 MMP1P03956 469 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 CIITAP33076 1130 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 SARSP49591 514 aaKnown RBP11.72□□□□□ -0.53
TTC28-207ENST00000490475 USP11P51784 963 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 TCEAL5Q5H9L2 206 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 JAKMIP3Q5VZ66 844 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 CPLX2Q6PUV4 134 aaKnown RBP11.72□□□□□ -0.53
TTC28-207ENST00000490475 GJD3Q8N144 294 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 CRYGNQ8WXF5 182 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 PGBD1Q96JS3 809 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 BACH2Q9BYV9 841 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 OSBPL7Q9BZF2 842 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 AGO3Q9H9G7 860 aaKnown RBP11.72□□□□□ -0.53
TTC28-207ENST00000490475 PCDHB7Q9Y5E2 793 aa11.72□□□□□ -0.53
TTC28-207ENST00000490475 MAFBQ9Y5Q3 323 aaPredicted RBP11.72□□□□□ -0.53
TTC28-207ENST00000490475 IGLV3-22A0A075B6J6 115 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 DENND3A2RUS2 1198 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 WDR64B1ANS9 1081 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 FAM86B1E9PN63 330 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 PI4K2BG5E9Z4 385 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 HOXA2O43364 376 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 RPS6KA5O75582 802 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 CTDNEP1O95476 244 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 FAM86B2P0C5J1 330 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 SFNP31947 248 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 SSTR3P32745 418 aaPredicted RBP11.71□□□□□ -0.53
TTC28-207ENST00000490475 CRYBB1P53674 252 aaPredicted RBP11.71□□□□□ -0.53
TTC28-207ENST00000490475 CDC42EP1Q00587 391 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 UBE3AQ05086 875 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 NFX1Q12986 1120 aaKnown RBP11.71□□□□□ -0.53
TTC28-207ENST00000490475 SWSAP1Q6NVH7 229 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 SLC24A5Q71RS6 500 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.71□□□□□ -0.53
TTC28-207ENST00000490475 RSPH1Q8WYR4 309 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 MAP7D2Q96T17 732 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 UPF2Q9HAU5 1272 aaKnown RBP11.71□□□□□ -0.53
TTC28-207ENST00000490475 NRBP2Q9NSY0 501 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 TMEM260Q9NX78 707 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 CLDND1Q9NY35 253 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 SAMM50Q9Y512 469 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 PCDHB12Q9Y5F1 795 aa11.71□□□□□ -0.53
TTC28-207ENST00000490475 CARNS1A5YM72 827 aa11.7□□□□□ -0.54
TTC28-207ENST00000490475 DDX39AO00148 427 aaKnown RBP11.7□□□□□ -0.54
TTC28-207ENST00000490475 DHX15O43143 795 aaKnown RBP11.7□□□□□ -0.54
TTC28-207ENST00000490475 CCNE2O96020 404 aa11.7□□□□□ -0.54
TTC28-207ENST00000490475 JAK3P52333 1124 aa11.7□□□□□ -0.54
TTC28-207ENST00000490475 PRR16Q569H4 304 aa11.7□□□□□ -0.54
TTC28-207ENST00000490475 GALNT17Q6IS24 598 aa11.7□□□□□ -0.54
TTC28-207ENST00000490475 PDE12Q6L8Q7 609 aaKnown RBP11.7□□□□□ -0.54
TTC28-207ENST00000490475 EP400NLQ6ZTU2 488 aa11.7□□□□□ -0.54
TTC28-207ENST00000490475 CCDC60Q8IWA6 550 aaPredicted RBP11.7□□□□□ -0.54
TTC28-207ENST00000490475 KIAA0319LQ8IZA0 1049 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms