RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 NBPF12Q5TAG4 269 aaPredicted RBP7.54□□□□□ -1.2
VPS50-215ENST00000480943 FTSJ3Q8IY81 847 aaKnown RBP7.54□□□□□ -1.2
VPS50-215ENST00000480943 GATAD2BQ8WXI9 593 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 TEKT1Q969V4 418 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 COX4I2Q96KJ9 171 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 RSRP1Q9BUV0 290 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 BCL11AQ9H165 835 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 MYH7P12883 1935 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 PHIPQ8WWQ0 1821 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 MYH1P12882 1939 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 PNMA6EA0A0J9YXQ4 647 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 FAM221AA4D161 298 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 CBX7O95931 251 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 F13A1P00488 732 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 RAC2P15153 192 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 PRDX5P30044 214 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 ADORA1P30542 326 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 PHKA1P46020 1223 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 TNNI2P48788 182 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 CACNB3P54284 484 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 TFCP2Q12800 502 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 MTX1Q13505 466 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 SNAP47Q5SQN1 464 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 MCATQ8IVS2 390 aaKnown RBP7.53□□□□□ -1.2
VPS50-215ENST00000480943 BAHD1Q8TBE0 780 aaPredicted RBP7.53□□□□□ -1.2
VPS50-215ENST00000480943 WDR66Q8TBY9 1149 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 ACSF2Q96CM8 615 aaPredicted RBP7.53□□□□□ -1.2
VPS50-215ENST00000480943 HSPA12BQ96MM6 686 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 RNF186Q9NXI6 227 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 CORINQ9Y5Q5 1042 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 CAPN6Q9Y6Q1 641 aa7.53□□□□□ -1.2
VPS50-215ENST00000480943 ZSWIM8A7E2V4 1837 aa7.52□□□□□ -1.2
VPS50-215ENST00000480943 MYH8P13535 1937 aa7.52□□□□□ -1.2
VPS50-215ENST00000480943 A0A1B0GUL7 405 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 OVOL3O00110 214 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 PLCG1P19174 1290 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 ETV3P41162 512 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 HDLBPQ00341 1268 aaKnown RBP7.52□□□□□ -1.21
VPS50-215ENST00000480943 FAM160A1Q05DH4 1040 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 SUPT20HL1Q3ZLR7 823 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 LDLRAD1Q5T700 205 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 CDKAL1Q5VV42 579 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 CDH24Q86UP0 819 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 ITPRIPQ8IWB1 547 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 WNK4Q96J92 1243 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 CLMNQ96JQ2 1002 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 NEUROD6Q96NK8 337 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 TMEM39BQ9GZU3 492 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 GNL3LQ9NVN8 582 aaKnown RBP7.52□□□□□ -1.21
VPS50-215ENST00000480943 SAGE1Q9NXZ1 904 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 TMOD2Q9NZR1 351 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 DENND2AQ9ULE3 1009 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 SUGT1Q9Y2Z0 365 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 SIPA1L1O43166 1804 aa7.52□□□□□ -1.21
VPS50-215ENST00000480943 MGAMO43451 1857 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 MINDY4BA8MYZ0 360 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 H3BS24 57 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 USP2O75604 605 aaPredicted RBP7.51□□□□□ -1.21
VPS50-215ENST00000480943 KIR3DL1P43629 444 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 TIMM10P62072 90 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 SREBF2Q12772 1141 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 G3BP1Q13283 466 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS50-215ENST00000480943 OS9Q13438 667 aaPredicted RBP7.51□□□□□ -1.21
VPS50-215ENST00000480943 ZNF385BQ569K4 471 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 HHIPL2Q6UWX4 724 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 GOLM1Q8NBJ4 401 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 FAM13CQ8NE31 585 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 ABHD4Q8TB40 342 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 ABHD8Q96I13 439 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 ZDHHC15Q96MV8 337 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 TEPSINQ96N21 525 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 KCNK12Q9HB15 430 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 MYRFQ9Y2G1 1151 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 NAV1Q8NEY1 1877 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 SALL1Q9NSC2 1324 aa7.51□□□□□ -1.21
VPS50-215ENST00000480943 RPAP1Q9BWH6 1393 aaPredicted RBP7.5□□□□□ -1.21
VPS50-215ENST00000480943 RFXAPO00287 272 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 TBC1D8O95759 1140 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 YARSP54577 528 aaKnown RBP7.5□□□□□ -1.21
VPS50-215ENST00000480943 RASGRF1Q13972 1273 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 MVPQ14764 893 aaKnown RBP7.5□□□□□ -1.21
VPS50-215ENST00000480943 GORABQ5T7V8 394 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 TMCO4Q5TGY1 634 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 APOBEC3HQ6NTF7 200 aaKnown RBP7.5□□□□□ -1.21
VPS50-215ENST00000480943 ERMP1Q7Z2K6 904 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 ANKRD13AQ8IZ07 590 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 PANK1Q8TE04 598 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 MCOLN1Q9GZU1 580 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 ATP13A1Q9HD20 1204 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 SEMA3GQ9NS98 782 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 KBTBD4Q9NVX7 518 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 ABCF2Q9UG63 623 aa7.5□□□□□ -1.21
VPS50-215ENST00000480943 CCDC85CA6NKD9 419 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 ZBTB48P10074 688 aaPredicted RBP7.49□□□□□ -1.21
VPS50-215ENST00000480943 TM4SF4P48230 202 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 ATP8B2P98198 1209 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 TCP10Q12799 353 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 MPP2Q14168 576 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 MRPL58Q14197 206 aaKnown RBP7.49□□□□□ -1.21
VPS50-215ENST00000480943 TMEM201Q5SNT2 666 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms