RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MTMR10Q9NXD2 777 aa17.52■□□□□ 0.4
HMGA1-206ENST00000478214 PCDHA12Q9UN75 941 aa17.52■□□□□ 0.4
HMGA1-206ENST00000478214 CEP131Q9UPN4 1083 aa17.52■□□□□ 0.4
HMGA1-206ENST00000478214 YBX2Q9Y2T7 364 aaKnown RBP17.52■□□□□ 0.4
HMGA1-206ENST00000478214 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.52■□□□□ 0.4
HMGA1-206ENST00000478214 MYOGP15173 224 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 TXKP42681 527 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 PSMC5P62195 406 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 CUL4AQ13619 759 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 ZNF174Q15697 407 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 RAB30Q15771 203 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 FBXO47Q5MNV8 452 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 TTC38Q5R3I4 469 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 TMCO2Q7Z6W1 182 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-206ENST00000478214 HERC6Q8IVU3 1022 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 NME8Q8N427 588 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 METTL13Q8N6R0 699 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 PHOSPHO2Q8TCD6 241 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 SH2D3AQ9BRG2 576 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 IFIH1Q9BYX4 1025 aaKnown RBP17.51■□□□□ 0.39
HMGA1-206ENST00000478214 TTC12Q9H892 705 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-206ENST00000478214 RGL1Q9NZL6 768 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 SEPT9Q9UHD8 586 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-206ENST00000478214 MSRAQ9UJ68 235 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 TRPV2Q9Y5S1 764 aa17.51■□□□□ 0.39
HMGA1-206ENST00000478214 DDX11L8A8MPP1 907 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 M0QZ92 97 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 MAGEB2O15479 319 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 EFCAB14O75071 495 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 P4HBP07237 508 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 QARSP47897 775 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 CLCN3P51790 818 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 MKRN4PQ13434 485 aaPredicted RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 NBR1Q14596 966 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 TARBP2Q15633 366 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 MTERF2Q49AM1 385 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 MCTP1Q6DN14 999 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 DYDC2Q96IM9 177 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 NIFKQ9BYG3 293 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 CELF4Q9BZC1 486 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 NKX2-4Q9H2Z4 354 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 AGO3Q9H9G7 860 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 CDHR5Q9HBB8 845 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 WRAP73Q9P2S5 460 aaPredicted RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 NOL7Q9UMY1 257 aaKnown RBP17.5■□□□□ 0.39
HMGA1-206ENST00000478214 PCDHA11Q9Y5I1 949 aa17.5■□□□□ 0.39
HMGA1-206ENST00000478214 MYH9P35579 1960 aaKnown RBP17.49■□□□□ 0.39
HMGA1-206ENST00000478214 TMEM265A0A087WTH1 108 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 H3BQV1 296 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 TRAPPC10P48553 1259 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 TOB1P50616 345 aaPredicted RBP17.49■□□□□ 0.39
HMGA1-206ENST00000478214 CYP4A11Q02928 519 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 TBC1D8BQ0IIM8 1120 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 EFCAB12Q6NXP0 572 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 TSHZ1Q6ZSZ6 1077 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 ANO5Q75V66 913 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 LRRC71Q8N4P6 559 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 LINC01465Q8N7H1 131 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 GUCD1Q96NT3 240 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 PPP1R16BQ96T49 567 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 EIF2AK1Q9BQI3 630 aaKnown RBP17.49■□□□□ 0.39
HMGA1-206ENST00000478214 LXNQ9BS40 222 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 ZNF576Q9H609 170 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 SUGCTQ9HAC7 445 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 GINS2Q9Y248 185 aa17.49■□□□□ 0.39
HMGA1-206ENST00000478214 KDM3AQ9Y4C1 1321 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 VTNP04004 478 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 CD52P31358 61 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 ORC2Q13416 577 aaPredicted RBP17.48■□□□□ 0.39
HMGA1-206ENST00000478214 CTTNQ14247 550 aaKnown RBP17.48■□□□□ 0.39
HMGA1-206ENST00000478214 KIZQ2M2Z5 673 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 LARP1BQ659C4 914 aaKnown RBP17.48■□□□□ 0.39
HMGA1-206ENST00000478214 PLA2G4FQ68DD2 849 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 APBB2Q92870 758 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 CEP89Q96ST8 783 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 CHD9Q3L8U1 2897 aa17.48■□□□□ 0.39
HMGA1-206ENST00000478214 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.47■□□□□ 0.39
HMGA1-206ENST00000478214 POTEMA6NI47 508 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 DKC1O60832 514 aaKnown RBP eCLIP17.47■□□□□ 0.39
HMGA1-206ENST00000478214 SLITRK3O94933 977 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 OR52Z1P0C646 297 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 TMOD1P28289 359 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 NPEPPSP55786 919 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 FAM117BQ6P1L5 589 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 TPH2Q8IWU9 490 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 C4orf19Q8IY42 314 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 MYOCDQ8IZQ8 938 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 C4orf32Q8N8J7 132 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 ZNF579Q8NAF0 562 aaKnown RBP17.47■□□□□ 0.39
HMGA1-206ENST00000478214 MAP7D2Q96T17 732 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 HSD17B14Q9BPX1 270 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 ZBED2Q9BTP6 218 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 ZSWIM4Q9H7M6 989 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 AKT3Q9Y243 479 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 PCDHB6Q9Y5E3 794 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 SQORQ9Y6N5 450 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 CDH23Q9H251 3354 aa17.47■□□□□ 0.39
HMGA1-206ENST00000478214 ZBTB39O15060 712 aa17.46■□□□□ 0.39
HMGA1-206ENST00000478214 TLL1O43897 1013 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms