RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 FAM49AQ9H0Q0 323 aaPredicted RBP11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 TMX1Q9H3N1 280 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 CWH43Q9H720 699 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 KCNK12Q9HB15 430 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 VAT1LQ9HCJ6 419 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 SH2B1Q9NRF2 756 aaPredicted RBP11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 CA14Q9ULX7 337 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 SQORQ9Y6N5 450 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 LOXHD1Q8IVV2 1947 aa11.23□□□□□ -0.61
SMARCB1-206ENST00000477836 ANKRD11Q6UB99 2663 aaPredicted RBP11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 M0QZ92 97 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 CLASP2O75122 1294 aaKnown RBP11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 FGRP09769 529 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 MARK3P27448 753 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 PBX3P40426 434 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 IGBP1P78318 339 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 LMNB2Q03252 620 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 KRT17Q04695 432 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 NFX1Q12986 1120 aaKnown RBP11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 SMC1AQ14683 1233 aaKnown RBP11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 TMEM266Q2M3C6 531 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 GNPTABQ3T906 1256 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 MARCH8Q5T0T0 291 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 MRPL43Q8N983 215 aaKnown RBP11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 TBC1D17Q9HA65 648 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 WNT16Q9UBV4 365 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 TRPV2Q9Y5S1 764 aa11.22□□□□□ -0.61
SMARCB1-206ENST00000477836 IGSF9BQ9UPX0 1349 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 MBLAC1A4D2B0 266 aaPredicted RBP11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 C2orf71A6NGG8 1288 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 MGEA5O60502 916 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 PDE4AP27815 886 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 GHRHRQ02643 423 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 DMWDQ09019 674 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 PPM1JQ5JR12 505 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 VPS53Q5VIR6 699 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 TMC5Q6UXY8 1006 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 OTOP3Q7RTS5 596 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 FCHSD1Q86WN1 690 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 FEZF2Q8TBJ5 459 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 SECISBP2LQ93073 1101 aaKnown RBP11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 GPATCH3Q96I76 525 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 JMJD4Q9H9V9 463 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 DZANK1Q9NVP4 752 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 DLGAP2Q9P1A6 1054 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 USP18Q9UMW8 372 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 SIT1Q9Y3P8 196 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 PCDHA1Q9Y5I3 950 aa11.21□□□□□ -0.61
SMARCB1-206ENST00000477836 DENND4AQ7Z401 1863 aa11.21□□□□□ -0.62
SMARCB1-206ENST00000477836 FAM208BQ5VWN6 2430 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 DENND3A2RUS2 1198 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 POTEMA6NI47 508 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 SPATA31C2B4DYI2 1134 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 FGFR1P11362 822 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 TCF7P36402 384 aaPredicted RBP11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 SEMA3FQ13275 785 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 ZMYM1Q5SVZ6 1142 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 POTEGQ6S5H5 508 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 KCNT2Q6UVM3 1135 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 CCDC149Q6ZUS6 474 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 TMEM87AQ8NBN3 555 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 ZKSCAN3Q9BRR0 538 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 AMNQ9BXJ7 453 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 MAP3K20Q9NYL2 800 aaKnown RBP11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 RTEL1Q9NZ71 1219 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 IGSF9Q9P2J2 1179 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 GPR179Q6PRD1 2367 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 WDFY3Q8IZQ1 3526 aa11.2□□□□□ -0.62
SMARCB1-206ENST00000477836 FIBPO43427 364 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 RPLP2P05387 115 aaKnown RBP11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 EPCAMP16422 314 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 PPM1AP35813 382 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 MRPS9P82933 396 aaKnown RBP11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 SLC24A5Q71RS6 500 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 MAML2Q8IZL2 1156 aaPredicted RBP11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 PNMA1Q8ND90 353 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 RSAD2Q8WXG1 361 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 ZNF558Q96NG5 402 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 ADAM2Q99965 735 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 CELF4Q9BZC1 486 aaKnown RBP11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 ATP6V0A4Q9HBG4 840 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 RGS18Q9NS28 235 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 ERAP1Q9NZ08 941 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 SPG21Q9NZD8 308 aa11.19□□□□□ -0.62
SMARCB1-206ENST00000477836 SPDYE4A6NLX3 237 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 SPTLC1O15269 473 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 CXCL14O95715 111 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 GLULP15104 373 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 ASPRV1Q53RT3 343 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 PHLDB3Q6NSJ2 640 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 LRRC55Q6ZSA7 311 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 CABP7Q86V35 215 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 GLG1Q92896 1179 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 INPP4AQ96PE3 977 aaPredicted RBP11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 C1orf112Q9NSG2 853 aa11.18□□□□□ -0.62
SMARCB1-206ENST00000477836 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.17□□□□□ -0.62
SMARCB1-206ENST00000477836 TRIM6-TRIM34B2RNG4 842 aa11.17□□□□□ -0.62
SMARCB1-206ENST00000477836 C9IYK1 514 aa11.17□□□□□ -0.62
SMARCB1-206ENST00000477836 GCOM1H8Y6P7 765 aaPredicted RBP11.17□□□□□ -0.62
SMARCB1-206ENST00000477836 PPP1R11O60927 126 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms