RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 USP28Q96RU2 1077 aa13.89□□□□□ -0.19
DDX56-209ENST00000473924 SH2D3AQ9BRG2 576 aa13.89□□□□□ -0.19
DDX56-209ENST00000473924 POLR3CQ9BUI4 534 aaPredicted RBP13.89□□□□□ -0.19
DDX56-209ENST00000473924 NIFKQ9BYG3 293 aaKnown RBP13.89□□□□□ -0.19
DDX56-209ENST00000473924 UBE2OQ9C0C9 1292 aaKnown RBP13.89□□□□□ -0.19
DDX56-209ENST00000473924 FAM49AQ9H0Q0 323 aaPredicted RBP13.89□□□□□ -0.19
DDX56-209ENST00000473924 WNT8AQ9H1J5 351 aa13.89□□□□□ -0.19
DDX56-209ENST00000473924 TUFT1Q9NNX1 390 aa13.89□□□□□ -0.19
DDX56-209ENST00000473924 PCDHA2Q9Y5H9 948 aa13.89□□□□□ -0.19
DDX56-209ENST00000473924 SMIM35A0A1B0GVV1 85 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 RSPH10B2B2RC85 870 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 CAND2O75155 1236 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 MED24O75448 989 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 STBD1O95210 358 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 C22orf31O95567 290 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 BRD1O95696 1058 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 CTSHP09668 335 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 RSPH10BP0C881 870 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 RPA1P27694 616 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 TMOD1P28289 359 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 RBL2Q08999 1139 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 STK38Q15208 465 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 TRIM71Q2Q1W2 868 aaKnown RBP13.88□□□□□ -0.19
DDX56-209ENST00000473924 XKR9Q5GH70 373 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 ZNF618Q5T7W0 954 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 GDF15Q99988 308 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 CYP26B1Q9NR63 512 aa13.88□□□□□ -0.19
DDX56-209ENST00000473924 TFIP11Q9UBB9 837 aaKnown RBP13.88□□□□□ -0.19
DDX56-209ENST00000473924 PP2D1A8MPX8 630 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 M0QZ92 97 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 ZBTB39O15060 712 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 LYPLA2O95372 231 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 PARNO95453 639 aaKnown RBP13.87□□□□□ -0.19
DDX56-209ENST00000473924 SPATA31C1P0DKV0 1188 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 MARCKSP29966 332 aaPredicted RBP13.87□□□□□ -0.19
DDX56-209ENST00000473924 CDC25AP30304 524 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 RFC2P35250 354 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 NPEPPSP55786 919 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 SLC39A14Q15043 492 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 PTPAQ15257 358 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 TARBP2Q15633 366 aaKnown RBP13.87□□□□□ -0.19
DDX56-209ENST00000473924 ZRSR1Q15695 479 aaKnown RBP13.87□□□□□ -0.19
DDX56-209ENST00000473924 IER5Q5VY09 327 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 EFCAB12Q6NXP0 572 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 DEFB128Q7Z7B8 93 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 EXOC8Q8IYI6 725 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 RPUSD2Q8IZ73 545 aaKnown RBP13.87□□□□□ -0.19
DDX56-209ENST00000473924 NME8Q8N427 588 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 PIGOQ8TEQ8 1089 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 SLC7A3Q8WY07 619 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 CDK5RAP3Q96JB5 506 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 AK8Q96MA6 479 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 NACC1Q96RE7 527 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 JPH2Q9BR39 696 aaPredicted RBP13.87□□□□□ -0.19
DDX56-209ENST00000473924 SUGCTQ9HAC7 445 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 ANKEF1Q9NU02 776 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 ATP6V1DQ9Y5K8 247 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 CEP290O15078 2479 aa13.87□□□□□ -0.19
DDX56-209ENST00000473924 MYH15Q9Y2K3 1946 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 ACRP10323 421 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 MUTP22033 750 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 LONP1P36776 959 aaKnown RBP13.86□□□□□ -0.19
DDX56-209ENST00000473924 UBA7P41226 1012 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 NASPP49321 788 aaPredicted RBP13.86□□□□□ -0.19
DDX56-209ENST00000473924 DNM2P50570 870 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 POLGP54098 1239 aaPredicted RBP13.86□□□□□ -0.19
DDX56-209ENST00000473924 NUCB2P80303 420 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 TMEM62Q0P6H9 643 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 ATL3Q6DD88 541 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 POTEGQ6S5H5 508 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 RPAINQ86UA6 219 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 LRRC71Q8N4P6 559 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 MAP7D2Q96T17 732 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 IL23AQ9NPF7 189 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 DDX19AQ9NUU7 478 aaKnown RBP13.86□□□□□ -0.19
DDX56-209ENST00000473924 CFAP45Q9UL16 551 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 KIAA1024Q9UPX6 916 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 AKT3Q9Y243 479 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 ZDHHC9Q9Y397 364 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 PPME1Q9Y570 386 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 KDM3AQ9Y4C1 1321 aa13.86□□□□□ -0.19
DDX56-209ENST00000473924 TANC1Q9C0D5 1861 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 A0A087WWV3 80 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 SPTLC2O15270 562 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 MAFO75444 373 aaPredicted RBP13.85□□□□□ -0.19
DDX56-209ENST00000473924 PFKMP08237 780 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 XRCC6P12956 609 aaKnown RBP eCLIP13.85□□□□□ -0.19
DDX56-209ENST00000473924 NCLP19338 710 aaKnown RBP13.85□□□□□ -0.19
DDX56-209ENST00000473924 BMP8BP34820 402 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 RFC5P40937 340 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 CLCN3P51790 818 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 MRPS6P82932 125 aaKnown RBP13.85□□□□□ -0.19
DDX56-209ENST00000473924 DNM1Q05193 864 aaKnown RBP13.85□□□□□ -0.19
DDX56-209ENST00000473924 CABP7Q86V35 215 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 KIAA0319LQ8IZA0 1049 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 ZNF579Q8NAF0 562 aaKnown RBP13.85□□□□□ -0.19
DDX56-209ENST00000473924 RASSF8Q8NHQ8 419 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 BMP2KQ9NSY1 1161 aaPredicted RBP13.85□□□□□ -0.19
DDX56-209ENST00000473924 GINS2Q9Y248 185 aa13.85□□□□□ -0.19
DDX56-209ENST00000473924 SRPRBQ9Y5M8 271 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms