RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SMARCA5O60264 1052 aaPredicted RBP5.76□□□□□ -1.49
VPS13A-210ENST00000471439 PPP2R2AP63151 447 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 NFE2L2Q16236 605 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 EEPD1Q7L9B9 569 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 CABP7Q86V35 215 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 PPIL6Q8IXY8 311 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 NLGN1Q8N2Q7 840 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 LILRB2Q8N423 598 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 RCBTB1Q8NDN9 531 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 MRFAP1L1Q96HT8 127 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 KCNC2Q96PR1 638 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS13A-210ENST00000471439 MRPL42Q9Y6G3 142 aaKnown RBP5.76□□□□□ -1.49
VPS13A-210ENST00000471439 CCDC88AQ3V6T2 1871 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 NRXN1Q9ULB1 1477 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 WNK3Q9BYP7 1800 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 KIF13BQ9NQT8 1826 aa5.76□□□□□ -1.49
VPS13A-210ENST00000471439 IQGAP3Q86VI3 1631 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 TRBV23OR9-2A0A075B6M9 112 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 A0A0G2JLW4 131 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 C22orf46C9J442 243 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 FFAR3O14843 346 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 MEFVO15553 781 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-210ENST00000471439 SCG5P05408 212 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 BCL6P41182 706 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 GRM1Q13255 1194 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 MTERF2Q49AM1 385 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 TTLL10Q6ZVT0 673 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 SMIM5Q71RC9 77 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 TP53I13Q8NBR0 393 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-210ENST00000471439 NETO2Q8NC67 525 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 DIO2Q92813 273 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 TSPAN17Q96FV3 270 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 CAPNS2Q96L46 248 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 C20orf173Q96LM9 149 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 NOX5Q96PH1 765 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 IER2Q9BTL4 223 aa5.75□□□□□ -1.49
VPS13A-210ENST00000471439 A0A0G2JLL6 359 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-210ENST00000471439 SGSM2O43147 1006 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 CA12O43570 354 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 PFKLP17858 780 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 HOXC12P31275 282 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 FOXO4P98177 505 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 VWA3BQ502W6 1294 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 SLC35F1Q5T1Q4 408 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 YOD1Q5VVQ6 348 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-210ENST00000471439 CYP4F22Q6NT55 531 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 NOP9Q86U38 636 aaKnown RBP5.74□□□□□ -1.49
VPS13A-210ENST00000471439 SMARCC2Q8TAQ2 1214 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 FEZF2Q8TBJ5 459 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 ARHGEF4Q9NR80 690 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 PPARGC1AQ9UBK2 798 aaKnown RBP5.74□□□□□ -1.49
VPS13A-210ENST00000471439 LMO7Q8WWI1 1683 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 CASKIN1Q8WXD9 1431 aa5.74□□□□□ -1.49
VPS13A-210ENST00000471439 MSCO60682 206 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 C8BP07358 591 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 HOXA5P20719 270 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 RPL11P62913 178 aaKnown RBP5.73□□□□□ -1.49
VPS13A-210ENST00000471439 IFRD2Q12894 506 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-210ENST00000471439 LRP10Q7Z4F1 713 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 FAM26EQ8N5C1 309 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 ST13P5Q8NFI4 369 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-210ENST00000471439 FNIP1Q8TF40 1166 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 RNPC3Q96LT9 517 aaKnown RBP5.73□□□□□ -1.49
VPS13A-210ENST00000471439 ZCCHC4Q9H5U6 513 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 ABT1Q9ULW3 272 aaKnown RBP5.73□□□□□ -1.49
VPS13A-210ENST00000471439 FAN1Q9Y2M0 1017 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 PCDHA2Q9Y5H9 948 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 TIMM13Q9Y5L4 95 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-210ENST00000471439 CHD8Q9HCK8 2581 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 TIAM2Q8IVF5 1701 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 USP6P35125 1406 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 ERBINQ96RT1 1412 aa5.73□□□□□ -1.49
VPS13A-210ENST00000471439 USP54Q70EL1 1684 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 BLACEA4D250 179 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 ADCY3O60266 1144 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 DLX3O60479 287 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 DLX2Q07687 328 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-210ENST00000471439 SSRP1Q08945 709 aaKnown RBP5.72□□□□□ -1.49
VPS13A-210ENST00000471439 KCNAB2Q13303 367 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 ACBD5Q5T8D3 534 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-210ENST00000471439 E4F1Q66K89 784 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-210ENST00000471439 CEP68Q76N32 757 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 Q8N1Y9 231 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 SH3TC2Q8TF17 1288 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 DDX11Q96FC9 970 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 PEX11GQ96HA9 241 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 KRTAP4-9Q9BYQ8 210 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 PARD6AQ9NPB6 346 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 PALD1Q9ULE6 856 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 PMF1-BGLAPU3KQ54 211 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 CRB1P82279 1406 aa5.72□□□□□ -1.49
VPS13A-210ENST00000471439 KIAA0100Q14667 2235 aaKnown RBP5.71□□□□□ -1.49
VPS13A-210ENST00000471439 CLTCL1P53675 1640 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 OTOL1A6NHN0 477 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-210ENST00000471439 FAM153BP0C7A2 387 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 NCAM1P13591 858 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 MAP2K2P36507 400 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 LTBRP36941 435 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 ECE1P42892 770 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms