RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 TKFCQ3LXA3 575 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 CCDC184Q52MB2 194 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 PARP10Q53GL7 1025 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 TRIM61Q5EBN2 209 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 EGFLAMQ63HQ2 1017 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 IQCEQ6IPM2 695 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 USP53Q70EK8 1073 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 JMJD8Q96S16 334 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 SYT17Q9BSW7 474 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 PDGFDQ9GZP0 370 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-208ENST00000469585 SRP68Q9UHB9 627 aaKnown RBP7.82□□□□□ -1.16
PTCD3-208ENST00000469585 CTNND2Q9UQB3 1225 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 KDM3BQ7LBC6 1761 aa7.82□□□□□ -1.16
PTCD3-208ENST00000469585 MAP3K15Q6ZN16 1313 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 TUBGCP6Q96RT7 1819 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 A0A1W2PQ45 241 aaPredicted RBP7.81□□□□□ -1.16
PTCD3-208ENST00000469585 A0A1W2PQY0 241 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 HPXP02790 462 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 SERPINB2P05120 415 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 ERVFC1P60507 584 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 CHRNEQ04844 493 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 KCNAB2Q13303 367 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 LAPTM5Q13571 262 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 CBX2Q14781 532 aaPredicted RBP7.81□□□□□ -1.16
PTCD3-208ENST00000469585 TCEA2Q15560 299 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 STYK1Q6J9G0 422 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 RSPO2Q6UXX9 243 aaPredicted RBP7.81□□□□□ -1.16
PTCD3-208ENST00000469585 DCAF4Q8WV16 495 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 DIO2Q92813 273 aa7.81□□□□□ -1.16
PTCD3-208ENST00000469585 MRPL4Q9BYD3 311 aaKnown RBP7.81□□□□□ -1.16
PTCD3-208ENST00000469585 C7orf72A4D263 438 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 FITM1A5D6W6 292 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 PLD2O14939 933 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 EFEMP2O95967 443 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 LCP1P13796 627 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 LTBRP36941 435 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 PIP4K2AP48426 406 aaPredicted RBP7.8□□□□□ -1.16
PTCD3-208ENST00000469585 RTP1P59025 263 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 GABREP78334 506 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 NR0B2Q15466 257 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 HSF5Q4G112 596 aaPredicted RBP7.8□□□□□ -1.16
PTCD3-208ENST00000469585 KCNT2Q6UVM3 1135 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 CEP128Q6ZU80 1094 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 CBLL1Q75N03 491 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 SPPL2CQ8IUH8 684 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 RCBTB1Q8NDN9 531 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 RPGRQ92834 1020 aaKnown RBP7.8□□□□□ -1.16
PTCD3-208ENST00000469585 PTPRN2Q92932 1015 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 TSR2Q969E8 191 aaKnown RBP7.8□□□□□ -1.16
PTCD3-208ENST00000469585 RC3H2Q9HBD1 1191 aaKnown RBP7.8□□□□□ -1.16
PTCD3-208ENST00000469585 GPR27Q9NS67 375 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 CHPF2Q9P2E5 772 aa7.8□□□□□ -1.16
PTCD3-208ENST00000469585 OAS3Q9Y6K5 1087 aaKnown RBP7.8□□□□□ -1.16
PTCD3-208ENST00000469585 RNF123Q5XPI4 1314 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 FANCIQ9NVI1 1328 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 PRAMEF22A3QJZ6 481 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 NRDCO43847 1150 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 CAMTA2O94983 1202 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 CT47B1P0C2W7 299 aaPredicted RBP7.79□□□□□ -1.16
PTCD3-208ENST00000469585 ZNF853P0CG23 659 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 NFIXQ14938 502 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 FNDC3BQ53EP0 1204 aaKnown RBP7.79□□□□□ -1.16
PTCD3-208ENST00000469585 TIGD5Q53EQ6 642 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 SMIM5Q71RC9 77 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 COPS6Q7L5N1 327 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 MAMDC2Q7Z304 686 aaPredicted RBP7.79□□□□□ -1.16
PTCD3-208ENST00000469585 OXR1Q8N573 874 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 GSTCDQ8NEC7 633 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 PLBD2Q8NHP8 589 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 ZNF622Q969S3 477 aaKnown RBP eCLIP7.79□□□□□ -1.162e-8■■□□□ 13.9
PTCD3-208ENST00000469585 CLUHP3Q96NS8 147 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 FEZ1Q99689 392 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 PHF20Q9BVI0 1012 aa7.79□□□□□ -1.16
PTCD3-208ENST00000469585 UTP14AQ9BVJ6 771 aaKnown RBP7.79□□□□□ -1.16
PTCD3-208ENST00000469585 C4AP0C0L4 1744 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 WTIPA6NIX2 430 aaPredicted RBP7.78□□□□□ -1.16
PTCD3-208ENST00000469585 POLRMTO00411 1230 aaKnown RBP7.78□□□□□ -1.16
PTCD3-208ENST00000469585 MSCO60682 206 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 RFPL3O75679 317 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 GPTP24298 496 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 DALRD3Q5D0E6 543 aaKnown RBP7.78□□□□□ -1.16
PTCD3-208ENST00000469585 TBC1D9BQ66K14 1250 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 C2CD5Q86YS7 1000 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 NLGN2Q8NFZ4 835 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 SLC7A14Q8TBB6 771 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 DPF3Q92784 378 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 ASIC4Q96FT7 647 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 ZFYVE21Q9BQ24 234 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 PLCD4Q9BRC7 762 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 BRIP1Q9BX63 1249 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 TRMT112Q9UI30 125 aaKnown RBP7.78□□□□□ -1.16
PTCD3-208ENST00000469585 TRAF6Q9Y4K3 522 aa7.78□□□□□ -1.16
PTCD3-208ENST00000469585 MYH14Q7Z406 1995 aaKnown RBP7.78□□□□□ -1.16
PTCD3-208ENST00000469585 SCN7AQ01118 1682 aa7.77□□□□□ -1.17
PTCD3-208ENST00000469585 PSPNO60542 156 aa7.77□□□□□ -1.17
PTCD3-208ENST00000469585 PPP1R11O60927 126 aaPredicted RBP7.77□□□□□ -1.17
PTCD3-208ENST00000469585 TM4SF1P30408 202 aa7.77□□□□□ -1.17
PTCD3-208ENST00000469585 ALDH1B1P30837 517 aa7.77□□□□□ -1.17
PTCD3-208ENST00000469585 TRHRP34981 398 aaPredicted RBP7.77□□□□□ -1.17
PTCD3-208ENST00000469585 EXOSC9Q06265 439 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms