RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 POLR3CQ9BUI4 534 aaPredicted RBP20.93■□□□□ 0.94
VIM-203ENST00000469543 HOMER2Q9NSB8 354 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 ZC3H4Q9UPT8 1303 aaKnown RBP20.93■□□□□ 0.94
VIM-203ENST00000469543 COL4A5P29400 1685 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 TMEM150BA6NC51 233 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 FAM13AO94988 1023 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 CEP55Q53EZ4 464 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 LDHDQ86WU2 507 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 RPGRIP1Q96KN7 1286 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 TYW1Q9NV66 732 aaKnown RBP20.92■□□□□ 0.94
VIM-203ENST00000469543 GCNT4Q9P109 453 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 COL20A1Q9P218 1284 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 ZMYM2Q9UBW7 1377 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 CYP2J2P51589 502 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 EPHA7Q15375 998 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 PPP4R3CPQ6ZMV5 832 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 IL31RAQ8NI17 732 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 SYN2Q92777 582 aaPredicted RBP20.92■□□□□ 0.94
VIM-203ENST00000469543 SIX2Q9NPC8 291 aa20.92■□□□□ 0.94
VIM-203ENST00000469543 TARSL2A2RTX5 802 aaKnown RBP20.91■□□□□ 0.94
VIM-203ENST00000469543 EIF3JO75822 258 aaKnown RBP20.91■□□□□ 0.94
VIM-203ENST00000469543 FAM151AQ8WW52 585 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 FIZ1Q96SL8 496 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 GOPCQ9HD26 462 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.91■□□□□ 0.943e-13■■■■□ 19.8
VIM-203ENST00000469543 GRID2IPA4D2P6 1211 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 AGPSO00116 658 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 NFIBO00712 420 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 CALUO43852 315 aaPredicted RBP20.91■□□□□ 0.94
VIM-203ENST00000469543 EGFRP00533 1210 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 TRIM49P0CI25 452 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 TRIM49CP0CI26 452 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 TCP1P17987 556 aaKnown RBP20.91■□□□□ 0.94
VIM-203ENST00000469543 ITGB5P18084 799 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 GPS2Q13227 327 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 HSP90B2PQ58FF3 399 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 WDR11Q9BZH6 1224 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 GLI1P08151 1106 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 PRLRP16471 622 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 SND1Q7KZF4 910 aaKnown RBP eCLIP20.91■□□□□ 0.942e-10■■□□□ 14.2
VIM-203ENST00000469543 GMLQ99445 158 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 FAM204AQ9H8W3 233 aa20.91■□□□□ 0.94
VIM-203ENST00000469543 TMCO5BA8MYB1 307 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 RNF40O75150 1001 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 SKIDA1Q1XH10 827 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 GRIPAP1Q4V328 841 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 MMGT1Q8N4V1 131 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 SLC5A5Q92911 643 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 NUCKS1Q9H1E3 243 aaKnown RBP20.9■□□□□ 0.94
VIM-203ENST00000469543 RANBP17Q9H2T7 1088 aaKnown RBP20.9■□□□□ 0.94
VIM-203ENST00000469543 VCPKMTQ9H867 229 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 IPO5O00410 1097 aaKnown RBP20.9■□□□□ 0.94
VIM-203ENST00000469543 GFPT2O94808 682 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 NOP2P46087 812 aaKnown RBP20.9■□□□□ 0.94
VIM-203ENST00000469543 CBWD6Q4V339 395 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 CBWD3Q5JTY5 395 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 CBWD5Q5RIA9 395 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 ODR4Q5SWX8 454 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 RNF10Q8N5U6 811 aaKnown RBP20.9■□□□□ 0.94
VIM-203ENST00000469543 BORCS6Q96GS4 357 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 LXNQ9BS40 222 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 PARVGQ9HBI0 331 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 NAGPAQ9UK23 515 aa20.9■□□□□ 0.94
VIM-203ENST00000469543 TUBBP07437 444 aa20.89■□□□□ 0.93
VIM-203ENST00000469543 VIL1P09327 827 aaKnown RBP20.89■□□□□ 0.93
VIM-203ENST00000469543 IQCEQ6IPM2 695 aa20.89■□□□□ 0.93
VIM-203ENST00000469543 ZSWIM2Q8NEG5 633 aa20.89■□□□□ 0.93
VIM-203ENST00000469543 EPB41P11171 864 aaKnown RBP20.89■□□□□ 0.93
VIM-203ENST00000469543 CAP2P40123 477 aa20.89■□□□□ 0.93
VIM-203ENST00000469543 PRELPP51888 382 aa20.89■□□□□ 0.93
VIM-203ENST00000469543 ALKBH5Q6P6C2 394 aaKnown RBP20.89■□□□□ 0.93
VIM-203ENST00000469543 ZNF720Q7Z2F6 126 aa20.89■□□□□ 0.93
VIM-203ENST00000469543 A0A0U1RQG5 324 aaPredicted RBP20.88■□□□□ 0.93
VIM-203ENST00000469543 CAPN2P17655 700 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 PAFAH1B1P43034 410 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 PPP2R5CQ13362 524 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 SPDYE2Q495Y8 402 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 FAM178BQ8IXR5 827 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 AENQ8WTP8 325 aaKnown RBP20.88■□□□□ 0.93
VIM-203ENST00000469543 OLFML3Q9NRN5 406 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 BMT2Q1RMZ1 405 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 FOXR1Q6PIV2 292 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 FAM186BQ8IYM0 893 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 TTLL6Q8N841 843 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 CHURC1Q8WUH1 139 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 EXOC4Q96A65 974 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 ZNF341Q9BYN7 854 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 PCIF1Q9H4Z3 704 aa20.88■□□□□ 0.93
VIM-203ENST00000469543 RPL13P26373 211 aaKnown RBP20.87■□□□□ 0.93
VIM-203ENST00000469543 MEI1Q5TIA1 1274 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 MCTP2Q6DN12 878 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 GBP6Q6ZN66 633 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 DAW1Q8N136 415 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 IFT81Q8WYA0 676 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 KCNH7Q9NS40 1196 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 FAM153BP0C7A2 387 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 DPEP1P16444 411 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 CARSP49589 748 aaKnown RBP20.87■□□□□ 0.93
VIM-203ENST00000469543 DLG4P78352 724 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 FAM153CQ494X1 144 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms