RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 WDR48Q8TAF3 677 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 FOXRED1Q96CU9 486 aaPredicted RBP5.7□□□□□ -1.5
VPS13D-203ENST00000466732 CARD11Q9BXL7 1154 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 MTFR1LQ9H019 292 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 PCIF1Q9H4Z3 704 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 ACSS2Q9NR19 701 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 PLAAQ9Y263 795 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 PTPN22Q9Y2R2 807 aa5.7□□□□□ -1.5
VPS13D-203ENST00000466732 K7ESM1 405 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 BUD31P41223 144 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-203ENST00000466732 EPHB4P54760 987 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 ALDH6A1Q02252 535 aaKnown RBP5.69□□□□□ -1.5
VPS13D-203ENST00000466732 ZNF174Q15697 407 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 CALML6Q8TD86 181 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 SSBP3Q9BWW4 388 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-203ENST00000466732 ZDHHC5Q9C0B5 715 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 PPP4R1LQ9P1A2 415 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 FBXO10Q9UK96 956 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 CNOT11Q9UKZ1 510 aaKnown RBP5.69□□□□□ -1.5
VPS13D-203ENST00000466732 SLC4A7Q9Y6M7 1214 aa5.69□□□□□ -1.5
VPS13D-203ENST00000466732 TLDC2A0PJX2 215 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 CNOT4O95628 575 aaKnown RBP5.68□□□□□ -1.5
VPS13D-203ENST00000466732 F2P00734 622 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 CYP17A1P05093 508 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 ATP2A2P16615 1042 aaKnown RBP5.68□□□□□ -1.5
VPS13D-203ENST00000466732 SLC9A1P19634 815 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 ETV4P43268 484 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 KCNQ1P51787 676 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 MOGSQ13724 837 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 PCBP1Q15365 356 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS13D-203ENST00000466732 GIMAP6Q6P9H5 292 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 OTOP2Q7RTS6 562 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 LIMS2Q7Z4I7 341 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 KIF18BQ86Y91 864 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 IFNL2Q8IZJ0 200 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 NXPE1Q8N323 547 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 MFSD3Q96ES6 412 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 FOXB1Q99853 325 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 PTPN18Q99952 460 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 TARS2Q9BW92 718 aaKnown RBP5.68□□□□□ -1.5
VPS13D-203ENST00000466732 OXSMQ9NWU1 459 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 CDC42EP3Q9UKI2 254 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 ZKSCAN5Q9Y2L8 839 aa5.68□□□□□ -1.5
VPS13D-203ENST00000466732 A0A0G2JNJ9 132 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 NPEPPSL1A6NEC2 478 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 ZNF891A8MT65 544 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 HMGCRP04035 888 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 PTX3P26022 381 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 APEX1P27695 318 aaKnown RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 RRADP55042 308 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 DSG1Q02413 1049 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 EFEMP1Q12805 493 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 EIF4HQ15056 248 aaKnown RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 PLEKHG4Q58EX7 1191 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 TMEM200BQ69YZ2 307 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 GLB1LQ6UWU2 654 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 PRRT2Q7Z6L0 340 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 E2F7Q96AV8 911 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 C16orf92Q96LL3 132 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 ELF4Q99607 663 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 JADE2Q9NQC1 790 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 IFT57Q9NWB7 429 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 H2AFY2Q9P0M6 372 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-203ENST00000466732 Q9UFV3 132 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 SPO11Q9Y5K1 396 aa5.67□□□□□ -1.5
VPS13D-203ENST00000466732 UBA6A0AVT1 1052 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-203ENST00000466732 GAS7O60861 476 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 PRLP01236 227 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 SLC6A3Q01959 620 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 EPHA7Q15375 998 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 ZNF827Q17R98 1081 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 SLFN13Q68D06 897 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 GRAMD4Q6IC98 578 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 LARP4Q71RC2 724 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13D-203ENST00000466732 AHI1Q8N157 1196 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 PPM1KQ8N3J5 372 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 MAML3Q96JK9 1138 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 SCYL1Q96KG9 808 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 MEGF9Q9H1U4 602 aa5.66□□□□□ -1.5
VPS13D-203ENST00000466732 GPR42O15529 346 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 MAFO75444 373 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-203ENST00000466732 RGS3P49796 1198 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 ROM1Q03395 351 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 SEPT7Q16181 437 aaKnown RBP5.65□□□□□ -1.5
VPS13D-203ENST00000466732 ZNF568Q3ZCX4 644 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 SPATS1Q496A3 300 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 ZMAT1Q5H9K5 638 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 TRIM68Q6AZZ1 485 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 ESRP1Q6NXG1 681 aaKnown RBP5.65□□□□□ -1.5
VPS13D-203ENST00000466732 CHTF18Q8WVB6 975 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 LOXL4Q96JB6 756 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 SAMD11Q96NU1 681 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 SEC61A2Q9H9S3 476 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 TOMM22Q9NS69 142 aa5.65□□□□□ -1.5
VPS13D-203ENST00000466732 THG1LQ9NWX6 298 aaKnown RBP5.65□□□□□ -1.5
VPS13D-203ENST00000466732 TMA7Q9Y2S6 64 aaKnown RBP5.65□□□□□ -1.5
VPS13D-203ENST00000466732 A0A087X0B3 334 aa5.64□□□□□ -1.51
VPS13D-203ENST00000466732 GSG1L2A8MUP6 293 aa5.64□□□□□ -1.51
VPS13D-203ENST00000466732 STAT5BP51692 787 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms