RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PSTPIP2Q9H939 334 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 FRMPD4Q14CM0 1322 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 ADGRA3Q8IWK6 1321 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 GVINP1Q7Z2Y8 2422 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 ESYT2A0FGR8 921 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 HOXD8P13378 290 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 DNAJB1P25685 340 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 NRIP1P48552 1158 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 GNPTABQ3T906 1256 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 NAALADL2Q58DX5 795 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 DGLUCYQ7Z3D6 616 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 CCDC83Q8IWF9 413 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 NSUN7Q8NE18 718 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 SMARCC2Q8TAQ2 1214 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 CCDC12Q8WUD4 166 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 SUSD6Q92537 303 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 ATP6V0A1Q93050 837 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 ZNF689Q96CS4 500 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 RMDN1Q96DB5 314 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 INPP4AQ96PE3 977 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 RC3H2Q9HBD1 1191 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 RIC8AQ9NPQ8 531 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 SH3GLB2Q9NR46 395 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 BARX2Q9UMQ3 279 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 DNAH14Q0VDD8 3507 aa13.56□□□□□ -0.24
SQSTM1-206ENST00000466342 C17orf102A2RUQ5 167 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 SMCO2A6NFE2 343 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 CAND2O75155 1236 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 GGPS1O95749 300 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 GLP2RO95838 553 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 ADCY7P51828 1080 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 MRPS9P82933 396 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 SP2Q02086 613 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 BTG3Q14201 252 aaPredicted RBP13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 USP17L6PQ6QN14 398 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 ZBTB33Q86T24 672 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 RBM23Q86U06 439 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 FAM177A1Q8N128 213 aaPredicted RBP13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 CCDC148Q8NFR7 591 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 SPPL3Q8TCT6 385 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 TMX3Q96JJ7 454 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 SPATA33Q96N06 139 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 LLPHQ9BRT6 129 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 ZMYND12Q9H0C1 365 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 GLT8D2Q9H1C3 349 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 MLXIPQ9HAP2 919 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 VPS54Q9P1Q0 977 aa13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 ORC3Q9UBD5 711 aaPredicted RBP13.55□□□□□ -0.24
SQSTM1-206ENST00000466342 SPATA31C2B4DYI2 1134 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 FIBPO43427 364 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 JAK2O60674 1132 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 DTNBO60941 627 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 ITGB1P05556 798 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 FDPSP14324 419 aaKnown RBP13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 UBA1P22314 1058 aaKnown RBP13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 NEDD9Q14511 834 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 UBE2SQ16763 222 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 HSDL1Q3SXM5 330 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 PCNX4Q63HM2 1172 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 UBALD2Q8IYN6 164 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 WASF1Q92558 559 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 ZFP91Q96JP5 570 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 AIFM3Q96NN9 605 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 C6orf50Q9HD87 102 aa13.54□□□□□ -0.24
SQSTM1-206ENST00000466342 TREHO43280 583 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 CTSHP09668 335 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 GNA11P29992 359 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 HOXC8P31273 242 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 CLK2P49760 499 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 FAM26DQ5JW98 314 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 ASTLQ6HA08 431 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 CNTNAP3BQ96NU0 1288 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 SENP7Q9BQF6 1050 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 C16orf70Q9BSU1 422 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 CNTNAP3Q9BZ76 1288 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 RNPEPQ9H4A4 650 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 TLE6Q9H808 572 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 RTEL1Q9NZ71 1219 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 PCDHGC5Q9Y5F6 944 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 DOCK5Q9H7D0 1870 aa13.53□□□□□ -0.24
SQSTM1-206ENST00000466342 SPDYE3A6NKU9 549 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 ENPP3O14638 875 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 DGKIO75912 1065 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 FOSP01100 380 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 XBP1P17861 261 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 CLCN5P51795 746 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 NLRP5P59047 1200 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 AP3B2Q13367 1082 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 PUM1Q14671 1186 aaKnown RBP eCLIP13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 METTL7BQ6UX53 244 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 NLRX1Q86UT6 975 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 KLHL23Q8NBE8 558 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 KREMEN2Q8NCW0 462 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 GIMAP8Q8ND71 665 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 BICD2Q8TD16 824 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 ATP8B4Q8TF62 1192 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 POF1BQ8WVV4 589 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 PCDHA6Q9UN73 950 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 SORCS3Q9UPU3 1222 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 PCDHA8Q9Y5H6 950 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms