RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 TAF2Q6P1X5 1199 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 RPUSD2Q8IZ73 545 aaKnown RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 NME8Q8N427 588 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 TMEM199Q8N511 208 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 SPC24Q8NBT2 197 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 CAGE1Q8TC20 777 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 DIS3LQ8TF46 1054 aaKnown RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 ATP8B4Q8TF62 1192 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 HAS1Q92839 578 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 NACC1Q96RE7 527 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 NT5C3AQ9H0P0 336 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 TNMDQ9H2S6 317 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 CLSTN2Q9H4D0 955 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.67□□□□□ -1.02
USP4-207ENST00000462673 GABBR1Q9UBS5 961 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 LRWD1Q9UFC0 647 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 GTF2IRD1Q9UHL9 959 aa8.67□□□□□ -1.02
USP4-207ENST00000462673 MCM3APO60318 1980 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 COL1A2P08123 1366 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 KIF28PB7ZC32 967 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 ZNF286BP0CG31 522 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 LONP1P36776 959 aaKnown RBP8.66□□□□□ -1.02
USP4-207ENST00000462673 UBA7P41226 1012 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 ZNF75DP51815 510 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 PSMC6P62333 389 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 DNM1Q05193 864 aaKnown RBP8.66□□□□□ -1.02
USP4-207ENST00000462673 PPFIA1Q13136 1202 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 PTK7Q13308 1070 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 ODR4Q5SWX8 454 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 IER5Q5VY09 327 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 RBM43Q6ZSC3 357 aaKnown RBP8.66□□□□□ -1.02
USP4-207ENST00000462673 FERMT3Q86UX7 667 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 TPH2Q8IWU9 490 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 C4orf19Q8IY42 314 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 DRC7Q8IY82 874 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 KRT222Q8N1A0 295 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 KAT2BQ92831 832 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 CALML4Q96GE6 196 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 CDK5RAP3Q96JB5 506 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 C16orf45Q96MC5 204 aaPredicted RBP8.66□□□□□ -1.02
USP4-207ENST00000462673 POLR3CQ9BUI4 534 aaPredicted RBP8.66□□□□□ -1.02
USP4-207ENST00000462673 SCAND2PQ9GZW5 306 aaPredicted RBP8.66□□□□□ -1.02
USP4-207ENST00000462673 UNC45AQ9H3U1 944 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 RNPEPQ9H4A4 650 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 TUFT1Q9NNX1 390 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 HDAC6Q9UBN7 1215 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 PCDHB6Q9Y5E3 794 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 LCTP09848 1927 aa8.66□□□□□ -1.02
USP4-207ENST00000462673 CENPFP49454 3210 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 MYH7BA7E2Y1 1941 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 GOLGA6L4A6NEF3 574 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 SPDYE4A6NLX3 237 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 PITPNM1O00562 1244 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 EDIL3O43854 480 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 GAS2O43903 313 aaKnown RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 CCNE2O96020 404 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 TIMP1P01033 207 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 OATP04181 439 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 SMIM10L2AP0DMW4 78 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 SMIM10L2BP0DMW5 78 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 TNNT1P13805 278 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 INSRRP14616 1297 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 MARK3P27448 753 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 RPA1P27694 616 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 RFC2P35250 354 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 TOB1P50616 345 aaPredicted RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 ATP2C1P98194 919 aaPredicted RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 DHX8Q14562 1220 aaKnown RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 SLC39A14Q15043 492 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 STK38Q15208 465 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 LRRC26Q2I0M4 334 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 TRIM60Q495X7 471 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 B3GNT9Q6UX72 402 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 FAM126BQ8IXS8 530 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 C7orf61Q8IZ16 206 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 RASSF8Q8NHQ8 419 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 KCNG4Q8TDN1 519 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 SLC7A3Q8WY07 619 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 CCDC34Q96HJ3 373 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 EIF2AK1Q9BQI3 630 aaKnown RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 PYM1Q9BRP8 204 aaKnown RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 NIFKQ9BYG3 293 aaKnown RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 BCAS3Q9H6U6 928 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 CBX8Q9HC52 389 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 PRDM5Q9NQX1 630 aaPredicted RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 ANKEF1Q9NU02 776 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 DNM3Q9UQ16 869 aa8.65□□□□□ -1.02
USP4-207ENST00000462673 MORC2Q9Y6X9 1032 aaPredicted RBP8.65□□□□□ -1.02
USP4-207ENST00000462673 LRRC37A2A6NM11 1700 aa8.65□□□□□ -1.03
USP4-207ENST00000462673 KDM3AQ9Y4C1 1321 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 FAM205CA6NFA0 338 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 KIAA0355O15063 1070 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 ASAP2O43150 1006 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 B4GALT4O60513 344 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 PPP6R2O75170 966 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 SLITRK3O94933 977 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 LYPLA2O95372 231 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 YEATS4O95619 227 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 CD4P01730 458 aa8.64□□□□□ -1.03
USP4-207ENST00000462673 PFKMP08237 780 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms